BLASTX nr result

ID: Cimicifuga21_contig00032311 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032311
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264351.2| PREDICTED: uncharacterized protein LOC100241...    95   5e-18
emb|CAN83105.1| hypothetical protein VITISV_007645 [Vitis vinifera]    95   5e-18
ref|XP_002320595.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
emb|CBI18109.3| unnamed protein product [Vitis vinifera]               83   2e-14
ref|XP_002526678.1| breast cancer type 2 susceptibility protein ...    74   1e-11

>ref|XP_002264351.2| PREDICTED: uncharacterized protein LOC100241398 [Vitis vinifera]
          Length = 1126

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 58/138 (42%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
 Frame = -3

Query: 407 MPTWQIFPDAGNTYRWVISSQAPTNKPELESRKTLIHHENPTSRLPSMEDLLIQGSSKLF 228
           M TWQIF D+ N +RW IS      KP  E+    I   + TSRLPSM DLL+QG SK+ 
Sbjct: 1   MSTWQIFSDSDNDFRWEISDAQSLTKPVEEASGAPIQPYDSTSRLPSMVDLLLQGCSKIL 60

Query: 227 QNCGGTYDEQAPMFRTXXXXXXXXXXXSIMKAMSVLGESDVGHRGPSKICDDKI---SPM 57
           +N  G   E  PMFRT           SI KA+SVLG+ D G  G     D+     + +
Sbjct: 61  EN-DGPCVESPPMFRTGLGKSVTVKQSSIAKALSVLGDDDFGAGGQDHDRDNGCGFSNSL 119

Query: 56  FQTGSGKSVQLKQSSVMK 3
           FQTGSGK V +  + +++
Sbjct: 120 FQTGSGKMVNISSAGLVR 137


>emb|CAN83105.1| hypothetical protein VITISV_007645 [Vitis vinifera]
          Length = 288

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 58/138 (42%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
 Frame = -3

Query: 407 MPTWQIFPDAGNTYRWVISSQAPTNKPELESRKTLIHHENPTSRLPSMEDLLIQGSSKLF 228
           M TWQIF D+ N +RW IS      KP  E+    I   + TSRLPSM DLL+QG SK+ 
Sbjct: 1   MSTWQIFSDSDNDFRWEISDAQSLTKPVEEASGAPIQPYDSTSRLPSMVDLLLQGCSKIL 60

Query: 227 QNCGGTYDEQAPMFRTXXXXXXXXXXXSIMKAMSVLGESDVGHRGPSKICDDKI---SPM 57
           +N  G   E  PMFRT           SI KA+SVLG+ D G  G     D+     + +
Sbjct: 61  EN-DGPCVESPPMFRTGLGKSVTVKQSSIAKALSVLGDDDFGAGGQDHDRDNGCGFSNSL 119

Query: 56  FQTGSGKSVQLKQSSVMK 3
           FQTGSGK V +  + +++
Sbjct: 120 FQTGSGKMVNISSAGLVR 137


>ref|XP_002320595.1| predicted protein [Populus trichocarpa] gi|222861368|gb|EEE98910.1|
           predicted protein [Populus trichocarpa]
          Length = 1186

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
 Frame = -3

Query: 407 MPTWQIFPDAGNTYRWVISSQAPTNKPELESRKTLIHHENPTSRLPSMEDLLIQGSSKLF 228
           M +W+IF D+GN +RW ++ Q    KPE +    LI   +  + LPSM DLL+QG  KL 
Sbjct: 1   MSSWKIFSDSGNNFRWEVTGQIIHTKPEPKQSGALIPPSSSKTHLPSMADLLLQGCPKLL 60

Query: 227 QNCGGTYDEQAPMFRTXXXXXXXXXXXSIMKAMSVLGESDVGHR---GPSKICDDKI--- 66
           +N        AP+FRT           SI KA+SVL + D       G +++   K+   
Sbjct: 61  EN------GNAPIFRTGSGKSVALKQSSIAKALSVLRDDDDAGEACGGENELSFSKLRKK 114

Query: 65  -------SPMFQTGSGKSVQLKQSSVMK 3
                  +P+F TGSGKSV LKQSS+ K
Sbjct: 115 GNEDNGNAPIFHTGSGKSVVLKQSSIAK 142


>emb|CBI18109.3| unnamed protein product [Vitis vinifera]
          Length = 1134

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 49/105 (46%), Positives = 58/105 (55%)
 Frame = -3

Query: 407 MPTWQIFPDAGNTYRWVISSQAPTNKPELESRKTLIHHENPTSRLPSMEDLLIQGSSKLF 228
           M TWQIF D+ N +RW IS      KP  E+    I   + TSRLPSM DLL+QG SK+ 
Sbjct: 1   MSTWQIFSDSDNDFRWEISDAQSLTKPVEEASGAPIQPYDSTSRLPSMVDLLLQGCSKIL 60

Query: 227 QNCGGTYDEQAPMFRTXXXXXXXXXXXSIMKAMSVLGESDVGHRG 93
           +N  G   E  PMFRT           SI KA+SVLG+ D G  G
Sbjct: 61  EN-DGPCVESPPMFRTGLGKSVTVKQSSIAKALSVLGDDDFGAGG 104


>ref|XP_002526678.1| breast cancer type 2 susceptibility protein brca2, putative
           [Ricinus communis] gi|223533978|gb|EEF35700.1| breast
           cancer type 2 susceptibility protein brca2, putative
           [Ricinus communis]
          Length = 1156

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 5/140 (3%)
 Frame = -3

Query: 407 MPTWQIFPDAGNTYRWVISSQ-APTNKPELESRKTLIHHENPTSRLPSMEDLLIQGSSKL 231
           M TWQIF DAG ++RW  SSQ   +++P   +   +  H      LPSM DLL+QG +KL
Sbjct: 1   MSTWQIFSDAGKSFRWESSSQILHSDRP---NDAAIQPHSCRAPPLPSMADLLLQGCTKL 57

Query: 230 FQNCGGTYDEQAPMFRTXXXXXXXXXXXSIMKAMSVLGESDVGHRGPSKICDDK----IS 63
            +N  G  D    MFRT           SI KA+SVLG+ D G         +       
Sbjct: 58  LEN--GVEDGNPMMFRTGLGKSVVLKQSSISKALSVLGDDDDGLSSGETHARENAHGFTH 115

Query: 62  PMFQTGSGKSVQLKQSSVMK 3
            +F TGSGKSV +  + +++
Sbjct: 116 SLFCTGSGKSVNVSSAGLVR 135


Top