BLASTX nr result

ID: Cimicifuga21_contig00032266 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032266
         (741 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB62040.1| CjMDR1 [Coptis japonica]                              260   2e-67
dbj|BAM11098.1| ABC protein [Coptis japonica]                         246   5e-63
emb|CBI37062.3| unnamed protein product [Vitis vinifera]              232   5e-59
ref|XP_002273987.1| PREDICTED: ABC transporter B family member 1...   232   5e-59
emb|CAN76787.1| hypothetical protein VITISV_029557 [Vitis vinifera]   232   7e-59

>dbj|BAB62040.1| CjMDR1 [Coptis japonica]
          Length = 1289

 Score =  260 bits (665), Expect = 2e-67
 Identities = 136/178 (76%), Positives = 151/178 (84%)
 Frame = +3

Query: 207 GEENSGHATTTTSYSAVEVTNGISGDKSDKKDSENLKGEENSVNTVPFYKLFSFADSNDV 386
           G+ N+  AT +TS S V+  NG S  K  ++ SE  K EE    +VP+YKL SFADS DV
Sbjct: 9   GDLNNHQATASTSNSPVQGANGTSETKGAQEKSEKSKEEEKIGQSVPYYKLLSFADSKDV 68

Query: 387 LLMVIGTIASVANGVSMPVMTLLLGELTDAFGTNANSDDTLRVVSKVALKFVYLAVGAGV 566
           LLMVIGTIA+VANG SMPVMTLLLG+L +AFG NAN+ DTLRVVSKVALKFVYL++GAGV
Sbjct: 69  LLMVIGTIAAVANGASMPVMTLLLGDLINAFGQNANNTDTLRVVSKVALKFVYLSIGAGV 128

Query: 567 ASFFQVACWMVTGERQAARIRNLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQD 740
           ASFFQVACWMVTGERQAARIR+LYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQD
Sbjct: 129 ASFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQD 186


>dbj|BAM11098.1| ABC protein [Coptis japonica]
          Length = 1292

 Score =  246 bits (627), Expect = 5e-63
 Identities = 129/179 (72%), Positives = 152/179 (84%), Gaps = 2/179 (1%)
 Frame = +3

Query: 210 EENSGHATTTTSYSAVEVTNGISGD-KSDKKDSENLKG-EENSVNTVPFYKLFSFADSND 383
           + N   AT +TS+S  ++TN  SG  KSD++DS+  +G E+ S  TVP+YKLFSFADS D
Sbjct: 11  QNNHLQATASTSHSPAKLTNKTSGSTKSDQQDSDKGEGVEKMSAETVPYYKLFSFADSKD 70

Query: 384 VLLMVIGTIASVANGVSMPVMTLLLGELTDAFGTNANSDDTLRVVSKVALKFVYLAVGAG 563
           ++LMVIGTIASVANG SMP+MT L+G+L +AFG NAN+ +TL VVS+VAL+FVYLAVGAG
Sbjct: 71  LVLMVIGTIASVANGASMPIMTFLVGDLINAFGQNANNKNTLPVVSRVALRFVYLAVGAG 130

Query: 564 VASFFQVACWMVTGERQAARIRNLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQD 740
           VAS FQVACWMVTGERQA+RIR+LYLKTILRQDVAFFDKETNTGEVVGRMSGD V IQD
Sbjct: 131 VASVFQVACWMVTGERQASRIRSLYLKTILRQDVAFFDKETNTGEVVGRMSGDIVRIQD 189


>emb|CBI37062.3| unnamed protein product [Vitis vinifera]
          Length = 1147

 Score =  232 bits (592), Expect = 5e-59
 Identities = 122/186 (65%), Positives = 144/186 (77%), Gaps = 7/186 (3%)
 Frame = +3

Query: 204 MGEENS------GHATTTTSYSAVEV-TNGISGDKSDKKDSENLKGEENSVNTVPFYKLF 362
           M EEN        H  TT+S  A+E  T   SG    ++DSE  K EE   +TVPF+KLF
Sbjct: 1   MAEENDLNGKTYMHEATTSSRGALETETVKSSGQNGKQQDSEKSK-EEGKPSTVPFHKLF 59

Query: 363 SFADSNDVLLMVIGTIASVANGVSMPVMTLLLGELTDAFGTNANSDDTLRVVSKVALKFV 542
           SFADS D+LLM+ GTI +  NG+ MP+M +L G+L D+FG N N+ D + +VSKV+LKFV
Sbjct: 60  SFADSTDMLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFV 119

Query: 543 YLAVGAGVASFFQVACWMVTGERQAARIRNLYLKTILRQDVAFFDKETNTGEVVGRMSGD 722
           YLAVGAG+A+FFQVACWMVTGERQAARIR+LYLKTILRQDVAFFDKETNTGEV+GRMSGD
Sbjct: 120 YLAVGAGIAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGD 179

Query: 723 TVLIQD 740
           TVLIQD
Sbjct: 180 TVLIQD 185


>ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera]
          Length = 1297

 Score =  232 bits (592), Expect = 5e-59
 Identities = 122/186 (65%), Positives = 144/186 (77%), Gaps = 7/186 (3%)
 Frame = +3

Query: 204 MGEENS------GHATTTTSYSAVEV-TNGISGDKSDKKDSENLKGEENSVNTVPFYKLF 362
           M EEN        H  TT+S  A+E  T   SG    ++DSE  K EE   +TVPF+KLF
Sbjct: 1   MAEENDLNGKTYMHEATTSSRGALETETVKSSGQNGKQQDSEKSK-EEGKPSTVPFHKLF 59

Query: 363 SFADSNDVLLMVIGTIASVANGVSMPVMTLLLGELTDAFGTNANSDDTLRVVSKVALKFV 542
           SFADS D+LLM+ GTI +  NG+ MP+M +L G+L D+FG N N+ D + +VSKV+LKFV
Sbjct: 60  SFADSTDMLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFV 119

Query: 543 YLAVGAGVASFFQVACWMVTGERQAARIRNLYLKTILRQDVAFFDKETNTGEVVGRMSGD 722
           YLAVGAG+A+FFQVACWMVTGERQAARIR+LYLKTILRQDVAFFDKETNTGEV+GRMSGD
Sbjct: 120 YLAVGAGIAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGD 179

Query: 723 TVLIQD 740
           TVLIQD
Sbjct: 180 TVLIQD 185


>emb|CAN76787.1| hypothetical protein VITISV_029557 [Vitis vinifera]
          Length = 1280

 Score =  232 bits (591), Expect = 7e-59
 Identities = 118/173 (68%), Positives = 140/173 (80%), Gaps = 1/173 (0%)
 Frame = +3

Query: 225 HATTTTSYSAVEV-TNGISGDKSDKKDSENLKGEENSVNTVPFYKLFSFADSNDVLLMVI 401
           H  TT+S  A+E  T   SG    ++DSE  K EE   +TVPF+KLFSFADS D+LLM+ 
Sbjct: 2   HEATTSSRGALETETVKSSGQNGKQQDSEKSK-EEGKPSTVPFHKLFSFADSTDMLLMIT 60

Query: 402 GTIASVANGVSMPVMTLLLGELTDAFGTNANSDDTLRVVSKVALKFVYLAVGAGVASFFQ 581
           GTI +  NG+ MP+M +L G+L D+FG N N+ D + +VSKV+LKFVYLAVGAG+A+FFQ
Sbjct: 61  GTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFVYLAVGAGIAAFFQ 120

Query: 582 VACWMVTGERQAARIRNLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQD 740
           VACWMVTGERQAARIR+LYLKTILRQDVAFFDKETNTGEV+GRMSGDTVLIQD
Sbjct: 121 VACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQD 173


Top