BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032202
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521241.1| pentatricopeptide repeat-containing protein,...   179   2e-43
emb|CBI37820.3| unnamed protein product [Vitis vinifera]              173   1e-41
ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containi...   173   1e-41
emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]   173   1e-41
ref|XP_003637117.1| Pentatricopeptide repeat-containing protein,...   162   2e-38

>ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539509|gb|EEF41097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 662

 Score =  179 bits (455), Expect = 2e-43
 Identities = 88/137 (64%), Positives = 102/137 (74%)
 Frame = -3

Query: 420 AAEILLKXXXXXXXXGDLVYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFV 241
           A  ILL           LV+AYNTLIAGYG  GR+ EA++LFD+IPF   QGK     F 
Sbjct: 224 AERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFE 283

Query: 240 RNVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM 61
           RNVVSWN++IMCYVKAGD+ SARKLF++M +RD  SWNTMISGY HV D+EEAS+LFH+M
Sbjct: 284 RNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKM 343

Query: 60  PDPDAQSWNSMISGYAQ 10
           P PD  SWN MISGYAQ
Sbjct: 344 PSPDTLSWNLMISGYAQ 360



 Score =  101 bits (252), Expect = 6e-20
 Identities = 56/122 (45%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
 Frame = -3

Query: 366 VYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGD 187
           +Y+ N  I+ +   GRI EAR LFD++               RN V+WNS+I  YVK G+
Sbjct: 47  LYSSNKKISHFTRTGRINEARALFDKLER-------------RNTVTWNSMISGYVKRGE 93

Query: 186 IFSARKLFNEMNERDVISWNTMISGYAHVSD---LEEASSLFHEMPDPDAQSWNSMISGY 16
           +  ARKLF+EM ERDV+SWN +ISGY        +EE  +LF +MP+    SWN+MISGY
Sbjct: 94  MTKARKLFDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGY 153

Query: 15  AQ 10
           A+
Sbjct: 154 AK 155



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
 Frame = -3

Query: 366 VYAYNTLIAGY-GANGR--IAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVK 196
           V ++N +I+GY    G+  I E R+LFD++P              R  VSWN++I  Y K
Sbjct: 109 VVSWNLIISGYVSCRGKRFIEEGRNLFDKMP-------------ERCCVSWNTMISGYAK 155

Query: 195 AGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPDAQSWNSMISGY 16
            G +  A  LFN M E++ +SWN M+SG+    D+  A   F  MP+ D  S ++++SG 
Sbjct: 156 NGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGL 215

Query: 15  AQVS 4
            Q S
Sbjct: 216 IQNS 219



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 47/74 (63%)
 Frame = -3

Query: 237 NVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMP 58
           N+ S N  I  + + G I  AR LF+++  R+ ++WN+MISGY    ++ +A  LF EMP
Sbjct: 46  NLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMP 105

Query: 57  DPDAQSWNSMISGY 16
           + D  SWN +ISGY
Sbjct: 106 ERDVVSWNLIISGY 119



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/123 (30%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
 Frame = -3

Query: 360 AYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGDIF 181
           ++NT+I+GY  NGR+ EA  LF+ +P              +N VSWN+++  +++ GD+ 
Sbjct: 145 SWNTMISGYAKNGRMDEALGLFNTMP-------------EKNSVSWNAMVSGFLQNGDVV 191

Query: 180 SARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPD------AQSWNSMISG 19
            A + F  M ERDV S + ++SG    S+L++A  +  +  +          ++N++I+G
Sbjct: 192 RAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAG 251

Query: 18  YAQ 10
           Y Q
Sbjct: 252 YGQ 254


>emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  173 bits (439), Expect = 1e-41
 Identities = 88/137 (64%), Positives = 103/137 (75%)
 Frame = -3

Query: 420 AAEILLKXXXXXXXXGDLVYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFV 241
           A  ILL         GDLV+AYN L+AGYG NGR+ +AR LFD+IPF    G+ +G  F 
Sbjct: 66  AKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF-YDGGQKDGGRFE 124

Query: 240 RNVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM 61
           RNVVSWNS+IMCYVKA DIFSAR LF++M ERD ISWNTMISGY  +SD+EEA  LF EM
Sbjct: 125 RNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM 184

Query: 60  PDPDAQSWNSMISGYAQ 10
           P+PD  +WNSMISG+AQ
Sbjct: 185 PNPDTLTWNSMISGFAQ 201


>ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  173 bits (439), Expect = 1e-41
 Identities = 88/137 (64%), Positives = 103/137 (75%)
 Frame = -3

Query: 420 AAEILLKXXXXXXXXGDLVYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFV 241
           A  ILL         GDLV+AYN L+AGYG NGR+ +AR LFD+IPF    G+ +G  F 
Sbjct: 243 AKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF-YDGGQKDGGRFE 301

Query: 240 RNVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM 61
           RNVVSWNS+IMCYVKA DIFSAR LF++M ERD ISWNTMISGY  +SD+EEA  LF EM
Sbjct: 302 RNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM 361

Query: 60  PDPDAQSWNSMISGYAQ 10
           P+PD  +WNSMISG+AQ
Sbjct: 362 PNPDTLTWNSMISGFAQ 378



 Score =  103 bits (256), Expect = 2e-20
 Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
 Frame = -3

Query: 366 VYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGD 187
           +Y  N  I+    NGRI EAR LFD +P              RN+V+WNS+I  YV+  +
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMP-------------QRNIVTWNSMITGYVRRRE 113

Query: 186 IFSARKLFNEMNERDVISWNTMISGYAHVSD--LEEASSLFHEMPDPDAQSWNSMISGYA 13
           +  ARKLF+EM +RDV+SWN MISGY       +EE   LF EMP+ D  SWN+MISGY 
Sbjct: 114 MAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYT 173

Query: 12  Q 10
           +
Sbjct: 174 R 174



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
 Frame = -3

Query: 366 VYAYNTLIAGY-GANGR-IAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKA 193
           V ++N +I+GY    GR + E R LFD +P              R+ VSWN++I  Y ++
Sbjct: 129 VVSWNLMISGYVSCQGRWVEEGRHLFDEMP-------------ERDCVSWNTMISGYTRS 175

Query: 192 GDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPDAQSWNSMISGYA 13
           G +  A +LF+ M ER+V+SWN M++G+    D+E A   F  MP+ D+ S +++++G  
Sbjct: 176 GRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLI 235

Query: 12  Q 10
           Q
Sbjct: 236 Q 236



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
 Frame = -3

Query: 360 AYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGDIF 181
           ++NT+I+GY  +GR+ EA  LFD     +Q+         RNVVSWN+++  +++ GD+ 
Sbjct: 164 SWNTMISGYTRSGRMDEALQLFD----SMQE---------RNVVSWNAMVTGFLQNGDVE 210

Query: 180 SARKLFNEMNERDVISWNTMISGYAHVSDLEEASS--LFHEMPDPD----AQSWNSMISG 19
            A + F  M ERD  S + +++G     +L+EA    L     D D      ++N +++G
Sbjct: 211 RAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAG 270

Query: 18  YAQ 10
           Y Q
Sbjct: 271 YGQ 273


>emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  173 bits (439), Expect = 1e-41
 Identities = 88/137 (64%), Positives = 103/137 (75%)
 Frame = -3

Query: 420 AAEILLKXXXXXXXXGDLVYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFV 241
           A  ILL         GDLV+AYN L+AGYG NGR+ +AR LFD+IPF    G+ +G  F 
Sbjct: 243 AKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPF-YDGGQKDGGRFE 301

Query: 240 RNVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM 61
           RNVVSWNS+IMCYVKA DIFSAR LF++M ERD ISWNTMISGY  +SD+EEA  LF EM
Sbjct: 302 RNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEM 361

Query: 60  PDPDAQSWNSMISGYAQ 10
           P+PD  +WNSMISG+AQ
Sbjct: 362 PNPDTLTWNSMISGFAQ 378



 Score =  102 bits (255), Expect = 3e-20
 Identities = 57/121 (47%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
 Frame = -3

Query: 366 VYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGD 187
           +Y  N  I+    NGRI EAR LFD +P              RN+V+WNS+I  YV+  +
Sbjct: 67  LYTPNKRISHLIRNGRINEARALFDAMP-------------QRNIVTWNSMITGYVRRRE 113

Query: 186 IFSARKLFNEMNERDVISWNTMISGYAHVSD--LEEASSLFHEMPDPDAQSWNSMISGYA 13
           +  ARKLF+EM +RDV+SWN MISGY       +EE   LF EMP+ D  SWN+MISGY 
Sbjct: 114 MAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYT 173

Query: 12  Q 10
           +
Sbjct: 174 R 174



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
 Frame = -3

Query: 366 VYAYNTLIAGY-GANGR-IAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKA 193
           V ++N +I+GY    GR + E R LFD +P              R+ VSWN++I  Y ++
Sbjct: 129 VVSWNLMISGYVSCRGRWVEEGRHLFDEMP-------------ERDCVSWNTMISGYTRS 175

Query: 192 GDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPDAQSWNSMISGYA 13
           G +  A +LF+ M ER+V+SWN M++G+    D+E A   F  MP+ D+ S +++++G  
Sbjct: 176 GRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLI 235

Query: 12  Q 10
           Q
Sbjct: 236 Q 236



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
 Frame = -3

Query: 360 AYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGDIF 181
           ++NT+I+GY  +GR+ EA  LFD     +Q+         RNVVSWN+++  +++ GD+ 
Sbjct: 164 SWNTMISGYTRSGRMDEALQLFD----SMQE---------RNVVSWNAMVTGFLQNGDVE 210

Query: 180 SARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPD------AQSWNSMISG 19
            A + F  M ERD  S + +++G     +L+EA  +       D        ++N +++G
Sbjct: 211 RAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAG 270

Query: 18  YAQ 10
           Y Q
Sbjct: 271 YGQ 273


>ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula] gi|355503052|gb|AES84255.1|
           Pentatricopeptide repeat-containing protein, partial
           [Medicago truncatula]
          Length = 592

 Score =  162 bits (411), Expect = 2e-38
 Identities = 79/138 (57%), Positives = 97/138 (70%)
 Frame = -3

Query: 420 AAEILLKXXXXXXXXGDLVYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFV 241
           AAEIL++         DLVYAYNTLIAGYG  G + EAR +FD +  D  +G        
Sbjct: 215 AAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLK 274

Query: 240 RNVVSWNSIIMCYVKAGDIFSARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM 61
           RNVVSWNS++MCYVKAGD+ SAR+LF+ M ERD  SWNT+I GY  + D+EEAS LF EM
Sbjct: 275 RNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEM 334

Query: 60  PDPDAQSWNSMISGYAQV 7
           P PD  SWNS+ISG++Q+
Sbjct: 335 PIPDVLSWNSIISGFSQI 352



 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 3/122 (2%)
 Frame = -3

Query: 366 VYAYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGD 187
           +Y  N  I+     GR+  AR LFD          +  H   RN V+WNS+I  YV+  +
Sbjct: 38  LYQLNKKISHLIRTGRLTAARTLFD----------STNH---RNTVTWNSMITGYVQRRE 84

Query: 186 IFSARKLFNEMNERDVISWNTMISGYAHVSD---LEEASSLFHEMPDPDAQSWNSMISGY 16
           I  AR+LF+EM  RD++SWN +ISGY        +EE   LF  MP  D  SWN++ISGY
Sbjct: 85  IAKARQLFDEMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGY 144

Query: 15  AQ 10
           A+
Sbjct: 145 AK 146



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
 Frame = -3

Query: 357 YNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKA-GDIF 181
           +N++I GY     IA+AR LFD +P             +R++VSWN II  Y    G  F
Sbjct: 72  WNSMITGYVQRREIAKARQLFDEMP-------------LRDIVSWNLIISGYFSCRGSRF 118

Query: 180 --SARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEMPDPDAQSWNSMISGY 16
               RKLF+ M +RD +SWNT+ISGYA    +++A  +F  MP+ +  S N++++G+
Sbjct: 119 VEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGF 175



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
 Frame = -3

Query: 360 AYNTLIAGYGANGRIAEARDLFDRIPFDLQQGKAEGHGFVRNVVSWNSIIMCYVKAGDIF 181
           ++NT+I+GY  NGR+ +A ++F+ +P              RNVVS N+++  ++  GD+ 
Sbjct: 136 SWNTVISGYAKNGRMDQAIEIFESMP-------------ERNVVSCNAVVNGFLLNGDVD 182

Query: 180 SARKLFNEMNERDVISWNTMISGYAHVSDLEEASSLFHEM------PDPDAQSWNSMISG 19
           SA   F +M ERD  S + ++SG      L+ A+ +  E        D    ++N++I+G
Sbjct: 183 SAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAG 242

Query: 18  YAQ 10
           Y Q
Sbjct: 243 YGQ 245