BLASTX nr result

ID: Cimicifuga21_contig00032137 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00032137
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300409.1| glutamate-gated kainate-type ion channel rec...   101   7e-20
ref|XP_002282943.2| PREDICTED: glutamate receptor 2.7-like [Viti...    99   3e-19
ref|XP_003634636.1| PREDICTED: glutamate receptor 2.8-like [Viti...    98   8e-19
emb|CBI20224.3| unnamed protein product [Vitis vinifera]               98   8e-19
ref|XP_002518390.1| glutamate receptor 2 plant, putative [Ricinu...    93   3e-17

>ref|XP_002300409.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222847667|gb|EEE85214.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 782

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/88 (53%), Positives = 67/88 (76%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFANSTITSSMQGVLGVKTYFPQ 180
           VH SL LA  LF +AK++ +MEKD VWITT  +T  +   +++I SSMQG++GVK+YF +
Sbjct: 180 VHLSLPLAVRLFEMAKKLKMMEKDYVWITTHHITSLVHSIDASIISSMQGIVGVKSYFSE 239

Query: 181 TGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
           TG+RF+DF+ RF+ RFR E P+E++ EP
Sbjct: 240 TGTRFQDFSSRFRKRFRRENPEEENNEP 267


>ref|XP_002282943.2| PREDICTED: glutamate receptor 2.7-like [Vitis vinifera]
          Length = 886

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 46/88 (52%), Positives = 66/88 (75%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFANSTITSSMQGVLGVKTYFPQ 180
           VH+SL +A  LF+ A E+G+MEK SVWITT S+T+ +   NS++ SSM+GVLG+K++F +
Sbjct: 223 VHSSLSMAERLFSKANELGMMEKGSVWITTDSITNLVHSMNSSVISSMEGVLGMKSFFQE 282

Query: 181 TGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
            G+RF+DF  RF+ +FR   PKE + EP
Sbjct: 283 DGARFQDFYSRFRQKFRSLYPKEDNYEP 310


>ref|XP_003634636.1| PREDICTED: glutamate receptor 2.8-like [Vitis vinifera]
          Length = 1162

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 46/88 (52%), Positives = 66/88 (75%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFANSTITSSMQGVLGVKTYFPQ 180
           VH+SL +A  +F+ A E+G+MEK SVWITT S+T+ +   NS+I SSM+GVLG+K++F +
Sbjct: 223 VHSSLSMAERVFSKANELGMMEKGSVWITTDSITNLVHSMNSSIISSMEGVLGMKSFFQE 282

Query: 181 TGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
            G+RF+DF  RF+ +FR   PKE + EP
Sbjct: 283 DGARFQDFYSRFRQKFRSLYPKEDNHEP 310



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +1

Query: 1    VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFAN-STITSSMQGVLGVKTYFP 177
            VHTSL+L  HLF  AK++ +M++  VWI T +++  +     STI+SSM G++GVK+YF 
Sbjct: 1009 VHTSLQLGVHLFETAKKMEMMKEVYVWIITDTISSLVHSVKASTISSSMDGIVGVKSYFN 1068

Query: 178  QTGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
            +T  +FK F  RF+ +F  E P E+  EP
Sbjct: 1069 ETTPQFKIFRGRFRRKFISEHPDEEKNEP 1097


>emb|CBI20224.3| unnamed protein product [Vitis vinifera]
          Length = 1053

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 46/88 (52%), Positives = 66/88 (75%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFANSTITSSMQGVLGVKTYFPQ 180
           VH+SL +A  +F+ A E+G+MEK SVWITT S+T+ +   NS+I SSM+GVLG+K++F +
Sbjct: 17  VHSSLSMAERVFSKANELGMMEKGSVWITTDSITNLVHSMNSSIISSMEGVLGMKSFFQE 76

Query: 181 TGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
            G+RF+DF  RF+ +FR   PKE + EP
Sbjct: 77  DGARFQDFYSRFRQKFRSLYPKEDNHEP 104



 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFAN-STITSSMQGVLGVKTYFP 177
           VHTSL+L  HLF  AK++ +M++  VWI T +++  +     STI+SSM G++GVK+YF 
Sbjct: 346 VHTSLQLGVHLFETAKKMEMMKEVYVWIITDTISSLVHSVKASTISSSMDGIVGVKSYFN 405

Query: 178 QTGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
           +T  +FK F  RF+ +F  E P E+  EP
Sbjct: 406 ETTPQFKIFRGRFRRKFISEHPDEEKNEP 434


>ref|XP_002518390.1| glutamate receptor 2 plant, putative [Ricinus communis]
           gi|223542485|gb|EEF44026.1| glutamate receptor 2 plant,
           putative [Ricinus communis]
          Length = 862

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 44/88 (50%), Positives = 60/88 (68%)
 Frame = +1

Query: 1   VHTSLRLAYHLFTLAKEIGLMEKDSVWITTTSVTDFLDFANSTITSSMQGVLGVKTYFPQ 180
           VH SL LA  L+  AKE+ +ME+D VWITT   T  +   NS+I SSMQG++GVK+Y P+
Sbjct: 224 VHASLSLAVRLYERAKEMNMMEEDYVWITTDPFTSLVHSINSSIISSMQGIVGVKSYLPE 283

Query: 181 TGSRFKDFNIRFQSRFRLEQPKEKSLEP 264
            G  F+DF  RF+SRF  + P+E + +P
Sbjct: 284 AGQYFQDFYNRFRSRFNRQYPEENNSDP 311


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