BLASTX nr result
ID: Cimicifuga21_contig00032112
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00032112
(538 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI38763.3| unnamed protein product [Vitis vinifera] 116 1e-35
ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24
ref|XP_002511804.1| pentatricopeptide repeat-containing protein,... 115 4e-24
ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 103 2e-20
ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containi... 103 2e-20
>emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 116 bits (290), Expect(2) = 1e-35
Identities = 73/170 (42%), Positives = 92/170 (54%), Gaps = 39/170 (22%)
Frame = -3
Query: 536 QVHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLW---LQKY 366
Q+HAH +K+ D N FVV GLVDM+AKCK ILEAE+LF P K +LW + Y
Sbjct: 159 QIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLF-ELAPDK--RNHVLWTAMVTGY 215
Query: 365 WKNRYGLRAMECFRDMKAEDVGSNQ------LTECVAMKARAFGLQVHNSIIQSGFG--- 213
+N G +A+ECFRDM+ E + NQ LT C ++ A FG QVH I++SGFG
Sbjct: 216 SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV 275
Query: 212 ---------------------------VEDVVSWNSLTVGCMRQGYEEEA 144
V+D VSWNS+ VGC+RQG EEA
Sbjct: 276 FVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEA 325
Score = 58.9 bits (141), Expect(2) = 1e-35
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = -2
Query: 144 SVLVNAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHGSH 1
S++ NA+V+MY K G+ AF VF M++ DV+SWTSL+TG H+GS+
Sbjct: 346 SLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSY 393
Score = 50.4 bits (119), Expect(2) = 3e-12
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = -2
Query: 144 SVLVNAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHG 7
S L N++V+MY K G + A +VF SM DV++WT+LI GYA +G
Sbjct: 420 SALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNG 465
Score = 45.8 bits (107), Expect(2) = 3e-12
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 9/140 (6%)
Frame = -3
Query: 536 QVHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLW---LQKY 366
QVH +++S NVFV LVDM++KC + A R T + W +
Sbjct: 261 QVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNAR----RMLETMEVDDPVSWNSMIVGC 316
Query: 365 WKNRYGLRAMECFRDMKAEDVGSNQLTECVAMKARAFGLQVHNSIIQSGFGV------ED 204
+ G A+ FR M + ++ T + + F V +D
Sbjct: 317 VRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKD 376
Query: 203 VVSWNSLTVGCMRQGYEEEA 144
V+SW SL GC+ G EEA
Sbjct: 377 VISWTSLVTGCVHNGSYEEA 396
>ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 116 bits (290), Expect = 2e-24
Identities = 73/170 (42%), Positives = 92/170 (54%), Gaps = 39/170 (22%)
Frame = -3
Query: 536 QVHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLW---LQKY 366
Q+HAH +K+ D N FVV GLVDM+AKCK ILEAE+LF P K +LW + Y
Sbjct: 159 QIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLF-ELAPDK--RNHVLWTAMVTGY 215
Query: 365 WKNRYGLRAMECFRDMKAEDVGSNQ------LTECVAMKARAFGLQVHNSIIQSGFG--- 213
+N G +A+ECFRDM+ E + NQ LT C ++ A FG QVH I++SGFG
Sbjct: 216 SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV 275
Query: 212 ---------------------------VEDVVSWNSLTVGCMRQGYEEEA 144
V+D VSWNS+ VGC+RQG EEA
Sbjct: 276 FVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEA 325
Score = 57.8 bits (138), Expect = 1e-06
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = -2
Query: 132 NAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHGSH 1
NA+V+MY K G+ AF VF M++ DV+SWTSL+TG H+GS+
Sbjct: 380 NALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSY 423
>ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548984|gb|EEF50473.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 607
Score = 115 bits (288), Expect = 4e-24
Identities = 67/167 (40%), Positives = 90/167 (53%), Gaps = 36/167 (21%)
Frame = -3
Query: 536 QVHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLWLQKYWKN 357
++H + +K+ D NVFVV LVD++AKC+ I EAE++F +K + L Y N
Sbjct: 140 RIHGYAIKTRLDANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHN 199
Query: 356 RYGLRAMECFRDMKAEDVGSNQ------LTECVAMKARAFGLQVHNSIIQSGFG------ 213
G RA++CFRDM+AE V SNQ LT C A+ FG+QVH I++SGFG
Sbjct: 200 GDGFRAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGVQVHGCIVRSGFGANIFVQ 259
Query: 212 ------------------------VEDVVSWNSLTVGCMRQGYEEEA 144
V DVVSWNS+ VGC+R+G+E EA
Sbjct: 260 SALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEA 306
Score = 58.9 bits (141), Expect = 5e-07
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = -2
Query: 132 NAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHGSH 1
NA+V+MY K G L AF VF+ M + DVVSWTSL+TGY+++GS+
Sbjct: 361 NALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSY 404
>ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 103 bits (257), Expect = 2e-20
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 36/166 (21%)
Frame = -3
Query: 533 VHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLWLQKYWKNR 354
+H + +K + N+FV GLVDM++KCK +LEAE+LF K + L Y +N
Sbjct: 156 IHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215
Query: 353 YGLRAMECFRDMKAEDVGSNQ------LTECVAMKARAFGLQVHNSIIQSGFG------- 213
L+A++CF++M+ + + SN LT C ++ A AFG QVH II SGFG
Sbjct: 216 ESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQS 275
Query: 212 -----------------------VEDVVSWNSLTVGCMRQGYEEEA 144
++DVV WNS+ VGC+ GY EEA
Sbjct: 276 ALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEA 321
Score = 57.8 bits (138), Expect = 1e-06
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -2
Query: 132 NAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHGSH 1
NA+V+MY K G LS A VF+ + + DV+SWTSL+TGY H+G H
Sbjct: 376 NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFH 419
>ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 103 bits (257), Expect = 2e-20
Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 36/166 (21%)
Frame = -3
Query: 533 VHAHVLKS*ADDNVFVVIGLVDMHAKCKRILEAEFLFLRKCPTKGTSRGLLWLQKYWKNR 354
+H + +K + N+FV GLVDM++KCK +LEAE+LF K + L Y +N
Sbjct: 156 IHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215
Query: 353 YGLRAMECFRDMKAEDVGSNQ------LTECVAMKARAFGLQVHNSIIQSGFG------- 213
L+A++CF++M+ + + SN LT C ++ A AFG QVH II SGFG
Sbjct: 216 ESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQS 275
Query: 212 -----------------------VEDVVSWNSLTVGCMRQGYEEEA 144
++DVV WNS+ VGC+ GY EEA
Sbjct: 276 ALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEA 321
Score = 57.8 bits (138), Expect = 1e-06
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -2
Query: 132 NAVVNMYVKGGFLSSAFRVFHSMSESDVVSWTSLITGYAHHGSH 1
NA+V+MY K G LS A VF+ + + DV+SWTSL+TGY H+G H
Sbjct: 376 NALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFH 419