BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031509
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   198   3e-49
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   185   3e-45
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   184   6e-45
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   184   6e-45
ref|XP_002531291.1| pentatricopeptide repeat-containing protein,...   181   5e-44

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  198 bits (504), Expect = 3e-49
 Identities = 94/142 (66%), Positives = 113/142 (79%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           LVSWNS+IAGYAQ+ D   +  LF+ M+ +N+ PD VTI++LVSAAAE+G+L+ GRWIHG
Sbjct: 327 LVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHG 386

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
           WVVR  MK+DAFL SA +DMY KCGSI++A M+F  V  KDV VWT MI GFAFHGYGS+
Sbjct: 387 WVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSK 446

Query: 68  ALELFQEMQEITRPNLVTFVAV 3
           AL+LF EMQE   PN VTFVAV
Sbjct: 447 ALQLFYEMQEYVMPNQVTFVAV 468



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
 Frame = -1

Query: 425 VSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHGW 246
           VS+N +I GYA++    E +     M+   ++PD+ T++ L+     +G    G+ +H W
Sbjct: 194 VSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAW 253

Query: 245 VVRAHM--KLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGS 72
           + R  +    +  L +AL+DMY KC  +  A  IFN +  KD   W  MIAG+A  G   
Sbjct: 254 IERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLE 313

Query: 71  RALELFQEM 45
            A   F++M
Sbjct: 314 IAHNFFEDM 322


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  185 bits (470), Expect = 3e-45
 Identities = 88/142 (61%), Positives = 107/142 (75%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VSWNSL+ GYA R D++ +  L   M+ + V PD VT++SLVSAA E G+L QGRW HG
Sbjct: 263 IVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHG 322

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
           WV+R  +KLDAFL SAL+DMYCKCGSIE+A  +F  +  KDV VWT MI G AFHGYGS+
Sbjct: 323 WVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSK 382

Query: 68  ALELFQEMQEITRPNLVTFVAV 3
           ALELF EMQE   P+ VTFV+V
Sbjct: 383 ALELFSEMQEDVSPDDVTFVSV 404



 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VS+N +I GYA++    E + LF  M+   + PD+ TI+ L+ +  ++G++  G+ +HG
Sbjct: 129 IVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHG 188

Query: 248 WVVRAHMKLDA--FLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYG 75
           W+ R    + +   L +AL+DMY KC  +E A+  F  +  KD+  W  ++AG A  G  
Sbjct: 189 WMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGEL 248

Query: 74  SRALELFQEM 45
            +A   F +M
Sbjct: 249 EQARLFFYQM 258



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/128 (26%), Positives = 64/128 (50%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           L  +N+LI+ ++  +   E   L+  ++     PDK T++ L+ A   V  + Q + IH 
Sbjct: 32  LFIYNTLISAFSSLKK-IESFYLYNVLLSSGECPDKQTLLYLLQA---VNFISQVKQIHC 87

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
             +   +    +L + L+ +Y + G +  A  +F ++   D+  +  MI G+A  G+G  
Sbjct: 88  QAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLE 147

Query: 68  ALELFQEM 45
           A+ LF EM
Sbjct: 148 AMRLFHEM 155


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  184 bits (467), Expect = 6e-45
 Identities = 88/142 (61%), Positives = 111/142 (78%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VSWNSLI+GYAQ  D+  +  LF  M  +NV+PDKVTIV+L+SA AE+G+L QGRWIHG
Sbjct: 261 IVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHG 320

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
             V+   K++AF  SAL+DMYCKCGSIE+A +IFN++  KDV  WT MI GFAFHG+G++
Sbjct: 321 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 380

Query: 68  ALELFQEMQEITRPNLVTFVAV 3
           ALELF  MQ  T+PN VTFV+V
Sbjct: 381 ALELFSVMQAETKPNDVTFVSV 402



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/128 (28%), Positives = 69/128 (53%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VS+N++I G+A+  +   ++ LF  M    + PD  T++ L+    ++G    G+ +H 
Sbjct: 129 VVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHA 188

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
            + ++    +  L +AL+DMY KC  ++ A  +F+    KD   W  +IAG+A  G    
Sbjct: 189 QIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELEL 248

Query: 68  ALELFQEM 45
           A +LF ++
Sbjct: 249 ACDLFNQI 256


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  184 bits (467), Expect = 6e-45
 Identities = 88/142 (61%), Positives = 111/142 (78%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VSWNSLI+GYAQ  D+  +  LF  M  +NV+PDKVTIV+L+SA AE+G+L QGRWIHG
Sbjct: 326 IVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHG 385

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
             V+   K++AF  SAL+DMYCKCGSIE+A +IFN++  KDV  WT MI GFAFHG+G++
Sbjct: 386 LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNK 445

Query: 68  ALELFQEMQEITRPNLVTFVAV 3
           ALELF  MQ  T+PN VTFV+V
Sbjct: 446 ALELFSVMQAETKPNDVTFVSV 467



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/128 (28%), Positives = 69/128 (53%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VS+N++I G+A+  +   ++ LF  M    + PD  T++ L+    ++G    G+ +H 
Sbjct: 194 VVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHA 253

Query: 248 WVVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSR 69
            + ++    +  L +AL+DMY KC  ++ A  +F+    KD   W  +IAG+A  G    
Sbjct: 254 QIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELEL 313

Query: 68  ALELFQEM 45
           A +LF ++
Sbjct: 314 ACDLFNQI 321


>ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529124|gb|EEF31104.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  181 bits (459), Expect = 5e-44
 Identities = 86/141 (60%), Positives = 106/141 (75%)
 Frame = -1

Query: 425 VSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHGW 246
           VSWNSLIA YA R D+  + +L   M+ +NV P+  T+ SL+SAAAE+G+L QGRW HGW
Sbjct: 326 VSWNSLIAEYANRGDFIIVRDLLYDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGW 385

Query: 245 VVRAHMKLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYGSRA 66
           V+R  +K+DA L SAL+DMYCKCGSI  A +IFN +  KDV +WT MI GFAFHGYGS+A
Sbjct: 386 VIRMQIKIDAVLGSALIDMYCKCGSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKA 445

Query: 65  LELFQEMQEITRPNLVTFVAV 3
           LELF EMQ    PN +TFV+V
Sbjct: 446 LELFYEMQANVTPNEITFVSV 466



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
 Frame = -1

Query: 428 LVSWNSLIAGYAQRRDWSELINLFKGMIDDNVRPDKVTIVSLVSAAAEVGSLYQGRWIHG 249
           +VS+N +I G A++    E I L   M+  +++PD+ T++ L+ +  ++G    G+ +H 
Sbjct: 191 VVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKPDEFTMLGLLVSCGKLGEARFGKTVHA 250

Query: 248 WVVRAHM--KLDAFLASALVDMYCKCGSIEKAIMIFNRVGGKDVAVWTAMIAGFAFHGYG 75
           W+ R       +  L +AL+DMY KC  ++ A   F+ +  KDV  W  +IAG A  G  
Sbjct: 251 WIERRKSITSSNLILGNALLDMYVKCQELDLAHRTFSALTEKDVVSWNTIIAGCAKAGDL 310

Query: 74  SRALELFQEM 45
             A  LF +M
Sbjct: 311 ELARTLFDQM 320