BLASTX nr result

ID: Cimicifuga21_contig00031493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031493
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635142.1| PREDICTED: uncharacterized protein LOC100244...   108   3e-22
ref|XP_002522340.1| zinc finger protein, putative [Ricinus commu...   104   9e-21
emb|CBI18563.3| unnamed protein product [Vitis vinifera]              103   2e-20
emb|CAN72540.1| hypothetical protein VITISV_028751 [Vitis vinifera]   102   3e-20
ref|XP_002310753.1| f-box family protein [Populus trichocarpa] g...    98   6e-19

>ref|XP_003635142.1| PREDICTED: uncharacterized protein LOC100244391 [Vitis vinifera]
          Length = 332

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/77 (67%), Positives = 60/77 (77%)
 Frame = -2

Query: 286 FLHGDVQNTAIQELYQRLRSSVNYYPDHSSATMSNVNPMLTSSSSITEHAPISGGEFGSW 107
           F+ G+VQNT IQELYQRLRSS NYY DHS   +SN    ++SSSSI E API+GGE G W
Sbjct: 259 FILGEVQNTGIQELYQRLRSSTNYYTDHSPVVLSNA---VSSSSSILESAPIAGGELGYW 315

Query: 106 NAPFSWSDVPSTNGAYP 56
           N  FSWSD+P+TNGAYP
Sbjct: 316 NPTFSWSDLPTTNGAYP 332


>ref|XP_002522340.1| zinc finger protein, putative [Ricinus communis]
           gi|223538418|gb|EEF40024.1| zinc finger protein,
           putative [Ricinus communis]
          Length = 335

 Score =  104 bits (259), Expect = 9e-21
 Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
 Frame = -2

Query: 286 FLHGDVQNTAIQELYQRLRSSVN-YYPDHSSATMSNVNPMLTSSSSITEHAPISGGEFGS 110
           F+ G+ QN+ IQELYQRLRSS N YY D+SS  +SNV    TSSS+I E +P++GGE G 
Sbjct: 258 FIVGEAQNSGIQELYQRLRSSTNTYYTDNSSVVLSNVGSSSTSSSNILESSPVAGGELGY 317

Query: 109 WNAPFSWSDVPSTNGAYP 56
           WN  FSWSD+P+TNGAYP
Sbjct: 318 WNPTFSWSDLPTTNGAYP 335


>emb|CBI18563.3| unnamed protein product [Vitis vinifera]
          Length = 425

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/94 (55%), Positives = 62/94 (65%), Gaps = 17/94 (18%)
 Frame = -2

Query: 286 FLHGDVQNTAIQELYQRLRSSVNYYPDHSSATMSN-----------------VNPMLTSS 158
           F+ G+VQNT IQELYQRLRSS NYY DHS   +SN                 ++  ++SS
Sbjct: 332 FILGEVQNTGIQELYQRLRSSTNYYTDHSPVVLSNAVSSSSSILESAPIAGVLSNAVSSS 391

Query: 157 SSITEHAPISGGEFGSWNAPFSWSDVPSTNGAYP 56
           SSI E API+GGE G WN  FSWSD+P+TNGAYP
Sbjct: 392 SSILESAPIAGGELGYWNPTFSWSDLPTTNGAYP 425


>emb|CAN72540.1| hypothetical protein VITISV_028751 [Vitis vinifera]
          Length = 309

 Score =  102 bits (254), Expect = 3e-20
 Identities = 49/71 (69%), Positives = 55/71 (77%)
 Frame = -2

Query: 268 QNTAIQELYQRLRSSVNYYPDHSSATMSNVNPMLTSSSSITEHAPISGGEFGSWNAPFSW 89
           QNT IQELYQRLRSS NYY DHS   +SN    ++SSSSI E API+GGE G WN  FSW
Sbjct: 242 QNTGIQELYQRLRSSTNYYTDHSPVVLSNA---VSSSSSILESAPIAGGELGYWNPTFSW 298

Query: 88  SDVPSTNGAYP 56
           SD+P+TNGAYP
Sbjct: 299 SDLPTTNGAYP 309


>ref|XP_002310753.1| f-box family protein [Populus trichocarpa]
           gi|118482074|gb|ABK92968.1| unknown [Populus
           trichocarpa] gi|222853656|gb|EEE91203.1| f-box family
           protein [Populus trichocarpa]
          Length = 323

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
 Frame = -2

Query: 286 FLHGDVQNTAIQELYQRLRSSVNYYPDHSSA-TMSNV-NPMLTSSSSITEHAPISGGEFG 113
           F  G+ QN+ IQELYQRLRSS NYY D+ SA  +SNV     TS+S+I E AP++GGE G
Sbjct: 245 FTVGEAQNSGIQELYQRLRSSTNYYTDNPSAIVLSNVATSSSTSTSTILESAPVAGGELG 304

Query: 112 SWNAPFSWSDVPSTNGAYP 56
            WN  FSWSD+P+TNGAYP
Sbjct: 305 YWNPAFSWSDLPTTNGAYP 323


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