BLASTX nr result
ID: Cimicifuga21_contig00031417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00031417
(326 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi... 165 4e-39
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi... 139 2e-31
ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|2... 139 2e-31
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,... 132 2e-29
ref|NP_172763.1| pentatricopeptide repeat-containing protein [Ar... 130 1e-28
>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product
[Vitis vinifera]
Length = 519
Score = 165 bits (417), Expect = 4e-39
Identities = 78/103 (75%), Positives = 90/103 (87%)
Frame = -2
Query: 310 LDYNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLED 131
+DYNRFIGVLVR+SRFDLAE+YY MIP+GFSL+SFTYSR ISGLCKV+N IE+LLED
Sbjct: 45 IDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLED 104
Query: 130 MDRLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKGRDP 2
MDRLG VPDIWAYNIYLN +C EN+LD AL ++QTM KGR+P
Sbjct: 105 MDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREP 147
>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
gi|449494962|ref|XP_004159696.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Cucumis sativus]
Length = 514
Score = 139 bits (350), Expect = 2e-31
Identities = 65/102 (63%), Positives = 79/102 (77%)
Frame = -2
Query: 307 DYNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLEDM 128
DYNRFIGVL+ SRFDLAE YY MIP+GFSL+ FTYSR IS LC+++N G I RLLEDM
Sbjct: 46 DYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTPFTYSRFISALCEIKNFGLIGRLLEDM 105
Query: 127 DRLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKGRDP 2
+LG +PDIWA+NIYLN + +EN L+ AL+ M KGR+P
Sbjct: 106 KQLGYLPDIWAFNIYLNLLFRENLLELALKFFDEMVAKGREP 147
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 11/87 (12%)
Frame = -2
Query: 238 GMIPKGFSLSSF-----------TYSRLISGLCKVRNLGFIERLLEDMDRLGAVPDIWAY 92
G I K ++ SF TY+ L++ C L + ++ M+R+G PD+++Y
Sbjct: 233 GRISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSY 292
Query: 91 NIYLNAICKENRLDTALEILQTMFRKG 11
N L +CK NRLD A +++ TM+ KG
Sbjct: 293 NQLLKGLCKANRLDKAYKLMNTMWEKG 319
>ref|XP_002312667.1| predicted protein [Populus trichocarpa] gi|222852487|gb|EEE90034.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 139 bits (350), Expect = 2e-31
Identities = 64/103 (62%), Positives = 80/103 (77%)
Frame = -2
Query: 310 LDYNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLED 131
+DYNRFIGVL+R SRFDLA YY M P GFSLSSFTYSR ISGLC+ + FI+ LL+D
Sbjct: 45 IDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFSLSSFTYSRFISGLCQTKEFTFIDNLLKD 104
Query: 130 MDRLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKGRDP 2
M++L VPDIWA+NIYLN + +ENR ++ALE+ M +GR+P
Sbjct: 105 MEKLHCVPDIWAFNIYLNLLFRENREESALEVFGRMVERGREP 147
Score = 59.7 bits (143), Expect = 2e-07
Identities = 28/98 (28%), Positives = 49/98 (50%)
Frame = -2
Query: 304 YNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLEDMD 125
Y I + + ++A +C M+ KG + +Y+ LI+G CK +G + L E M
Sbjct: 398 YTTIIDHHCKSGKVEMAHSIFCDMVEKGITPDVVSYNALINGFCKSLRVGEVMHLYEQML 457
Query: 124 RLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKG 11
+ G+ PD Y + + A+ +EN+L A + M +G
Sbjct: 458 QRGSFPDEVTYKLIIGALVRENKLSDACRVWDQMMERG 495
>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 554
Score = 132 bits (333), Expect = 2e-29
Identities = 61/103 (59%), Positives = 77/103 (74%)
Frame = -2
Query: 310 LDYNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLED 131
+DYNRFIGVL+ SRFDLA YY M +GFSLSSFTYSR I+GLCKV+N FI+ LL D
Sbjct: 45 IDYNRFIGVLINHSRFDLANHYYSQMGTRGFSLSSFTYSRFITGLCKVKNFTFIDELLHD 104
Query: 130 MDRLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKGRDP 2
M+ L +PDIWA+NIYL+ + E R+D ALE+ + + + GR P
Sbjct: 105 METLNCLPDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKP 147
Score = 56.6 bits (135), Expect = 2e-06
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = -2
Query: 268 RFDLAERYYCGMIPKG-FSLSSFTYSRLISGLCKVRNLGFIERLLEDMDRLGAVPDIWAY 92
+ DLA ++ G LS+ Y+ LISG C+ + + + M R G PD+ Y
Sbjct: 199 KVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRRNGCEPDLVTY 258
Query: 91 NIYLNAICKENRLDTALEILQTMFRKGRDP 2
N++LN C E LD A ++L+ M R G +P
Sbjct: 259 NVFLNYFCDELMLDDAKKLLKLMERSGIEP 288
>ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis
thaliana] gi|332190841|gb|AEE28962.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 130 bits (327), Expect = 1e-28
Identities = 60/102 (58%), Positives = 77/102 (75%)
Frame = -2
Query: 307 DYNRFIGVLVRESRFDLAERYYCGMIPKGFSLSSFTYSRLISGLCKVRNLGFIERLLEDM 128
DYNRFIGVLVRESRF+LAE Y M P GFSL FTYSR ISGLCKV+ I+ LL DM
Sbjct: 46 DYNRFIGVLVRESRFELAEAIYWDMKPMGFSLIPFTYSRFISGLCKVKKFDLIDALLSDM 105
Query: 127 DRLGAVPDIWAYNIYLNAICKENRLDTALEILQTMFRKGRDP 2
+ LG +PDIWA+N+YL+ +C+EN++ A++ M ++GR+P
Sbjct: 106 ETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREP 147