BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031401
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35966.3| unnamed protein product [Vitis vinifera]              139   3e-31
ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [S...   111   7e-23
tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide r...   106   2e-21
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   103   1e-20

>emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  139 bits (349), Expect = 3e-31
 Identities = 63/104 (60%), Positives = 83/104 (79%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           DQ  SPTD+SWN++IR YT++GSP +SL LY KML++  KPSNFT+PF+LKA ST  ++ 
Sbjct: 51  DQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVL 110

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEM 313
           EGEQIHTHV++ GF  D++V NSLIDMY KC  ++SA N +D+M
Sbjct: 111 EGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDM 154



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/101 (30%), Positives = 53/101 (52%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           D +S     SWNA+I      G   +++ LY  M    VKP+  T   +L A +   A+ 
Sbjct: 287 DGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALE 346

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVF 304
            G ++H ++ + G  L+V ++ +L+DMY KC  ++ A  +F
Sbjct: 347 LGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIF 387


>ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
           gi|241930650|gb|EES03795.1| hypothetical protein
           SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  111 bits (277), Expect = 7e-23
 Identities = 48/104 (46%), Positives = 72/104 (69%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           +QI SPT + WN ++R    + +P D+++ Y K  + G+KP N T+PF+LKA +  +A  
Sbjct: 368 EQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPK 427

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEM 313
           EGEQ+H+HV+K GF LD++VSNSLI +Y  C  +  A ++FDEM
Sbjct: 428 EGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEM 471



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/106 (35%), Positives = 54/106 (50%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           DQ+      SW  +I  YT      +++ L+  M+  G+ PS  T   ++ A S    I 
Sbjct: 30  DQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGIL 89

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQD 319
            GE +H + VK G   D  V NSLID+Y K   V+++  VFDEM D
Sbjct: 90  MGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLD 135



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/106 (34%), Positives = 57/106 (53%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           DQI +    SW++MI  Y+      DSL L+ +M +  VKP       +L A +   A+ 
Sbjct: 601 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALD 660

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQD 319
            G+ IH +V +   + D  + NSLIDM+ KC  ++ A  VF EM++
Sbjct: 661 LGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEE 706


>tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/103 (46%), Positives = 69/103 (66%)
 Frame = +2

Query: 5    QISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAISE 184
            QI SPT + WN ++R    + +P D+++ Y K  + G+KP N T+PF+LKA +   A  E
Sbjct: 899  QIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKE 958

Query: 185  GEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEM 313
            GEQ+H HV+K GF LD++VSNSLI +Y  C  +  A +VF+EM
Sbjct: 959  GEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEM 1001



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 37/106 (34%), Positives = 57/106 (53%)
 Frame = +2

Query: 2    DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
            DQI +    SW++MI  Y+      DSL L+ +M +  VKP       +L A +   A+ 
Sbjct: 1131 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALD 1190

Query: 182  EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQD 319
             G+ IH +V +   + D  + NSLIDM+ KC  V+ A  VF +M++
Sbjct: 1191 LGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEE 1236



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 37/106 (34%), Positives = 52/106 (49%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           DQ+      SW  +I  YT      ++L L   M+  G+ PS  T   ++ A S    I 
Sbjct: 569 DQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGIL 628

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQD 319
            GE ++ +  K G   D  V NSLID+Y K   V+++  VFDEM D
Sbjct: 629 MGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLD 674


>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  105 bits (262), Expect = 4e-21
 Identities = 48/104 (46%), Positives = 70/104 (67%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           D ISSP    WN M+R Y+ +  P  +LLLYH+ML N V  +++T+PFLLKA S   A  
Sbjct: 68  DSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFE 127

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEM 313
           E +QIH H++K GF L+VY +NSL+ +Y     ++SAH +F+++
Sbjct: 128 ETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQL 171



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 32/96 (33%), Positives = 51/96 (53%)
 Frame = +2

Query: 29  SWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAISEGEQIHTHV 208
           SW  MI  +   G   ++L L  +ML  G+KP + T    L A +   A+ +G+ IHT++
Sbjct: 209 SWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYI 268

Query: 209 VKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQ 316
            K   ++D  +   L DMY KC  +E A  VF +++
Sbjct: 269 EKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLE 304


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  103 bits (258), Expect = 1e-20
 Identities = 49/104 (47%), Positives = 68/104 (65%)
 Frame = +2

Query: 2   DQISSPTDYSWNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAIS 181
           D+I     + WN +IR Y  NG   ++++LYHKML  G++P NFT PF+LKA S   AI 
Sbjct: 106 DKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIG 165

Query: 182 EGEQIHTHVVKFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEM 313
           EG  IH +V+K G++ D++V  +LIDMY KC  V  A  VFD++
Sbjct: 166 EGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKI 209



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/96 (34%), Positives = 55/96 (57%)
 Frame = +2

Query: 32  WNAMIRCYTINGSPHDSLLLYHKMLQNGVKPSNFTYPFLLKASSTRFAISEGEQIHTHVV 211
           WN+M+  Y  NG P +S+ L  +M  NGV+P+  T   ++ +S+    +  G +IH    
Sbjct: 217 WNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGW 276

Query: 212 KFGFQLDVYVSNSLIDMYYKCSYVESAHNVFDEMQD 319
           + GFQ +  V  +LIDMY KC  V+ A  +F+ +++
Sbjct: 277 RHGFQSNDKVKTALIDMYAKCGSVKVALALFERLRE 312