BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031367
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    67   1e-09
gb|ABA98898.1| retrotransposon protein, putative, unclassified [...    63   3e-08
gb|AAX94970.1| retrotransposon protein, putative, unclassified [...    60   1e-07
gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japo...    60   1e-07
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   1e-07

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/93 (34%), Positives = 51/93 (54%)
 Frame = +2

Query: 20   RSWQRELVYKWWPLVFARKILALPLQKFPDQDEIIWNPSKYGEFSVKSCYKLLCQFSYPS 199
            +SW  E + K  P  +  +I  + +   P QD ++W P K GE++ K+ Y L    S+P+
Sbjct: 905  KSWNVEAIRKHLPQ-YEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPA 963

Query: 200  RQIKIPWIKHIWRLRVPQKVRFFLWQLATDALP 298
             Q+   W K+IW++    KV+ FLW+    ALP
Sbjct: 964  SQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALP 996


>gb|ABA98898.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1188

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
 Frame = +2

Query: 23   SWQRELVYK-WWPLVFARKILALPLQKFPDQDEIIWNPSKYGEFSVKSCYKLLCQF---- 187
            SW R+++ + +WPL     I ++ L    D+D I W P K G+FS++S Y L  Q     
Sbjct: 783  SWDRDVISQLFWPLD-GEIIKSIRLSSRQDEDFIAWYPDKMGQFSIRSAYMLAVQLANAG 841

Query: 188  ---SYPSRQIKIPWIKHIWRLRVPQKVRFFLWQLATDALP 298
               S      K  W  H+W+  +PQKV+ F W+  ++ LP
Sbjct: 842  ESSSSSGNDTKKVW-NHVWKCNIPQKVKVFSWRAISNCLP 880


>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77550533|gb|ABA93330.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 816

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
 Frame = +2

Query: 5   INPVTRSWQRELVYKWWPLVFARKILALPLQKFPDQDEIIWNPSKYGEFSVKSCYKLLCQ 184
           ++P  + W   L+ + +   +  +IL + L + P  D + W+P + G F+V+S YKL   
Sbjct: 234 VSPNNQEWDEGLIRQIFYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYKLGLA 293

Query: 185 FSYPSRQI----------KIPWIKHIWRLRVPQKVRFFLWQLATDALP 298
             + + +           ++ W K+IW  +VPQKV  F W+LA + LP
Sbjct: 294 EEHRANEAGACSSNGNGDRVLW-KNIWSAQVPQKVCIFAWRLAVERLP 340


>gb|EEE62189.1| hypothetical protein OsJ_16976 [Oryza sativa Japonica Group]
          Length = 653

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
 Frame = +2

Query: 5   INPVTRSWQRELVYKWWPLVFARKILALPLQKFPDQDEIIWNPSKYGEFSVKSCYKLLCQ 184
           ++P  + W   L+ + +   +  +IL + L + P  D + W+P + G F+V+S YKL   
Sbjct: 234 VSPNNQEWDEGLIRQIFYPPYVDEILKIKLPESPTDDFLAWHPERLGVFTVRSAYKLGLA 293

Query: 185 FSYPSRQI----------KIPWIKHIWRLRVPQKVRFFLWQLATDALP 298
             + + +           ++ W K+IW  +VPQKV  F W+LA + LP
Sbjct: 294 EEHRANEAGACSSNGNGDRVLW-KNIWSAQVPQKVCIFAWRLAVERLP 340


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +2

Query: 5   INPVTRSWQRELVYKWWPLVFARKILALPLQKFPDQDEIIWNPSKYGEFSVKSCYKLLCQ 184
           I+  TRSW   L+   + L    +IL +PL      D IIW   K G +SVK+ Y++   
Sbjct: 532 IDAQTRSWNEPLIRNNFNLRDVDEILKIPLLHCEQNDAIIWRFDKKGVYSVKNAYRVCVD 591

Query: 185 FSYPSRQIKIPWIKH-IWRLRVPQKVRFFLWQLATDALP 298
                 + K+   ++ +W L +P KV+ F+W+L  D LP
Sbjct: 592 VLINRDEWKVEGDRNKLWSLPIPPKVKHFMWRLGRDCLP 630