BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031353
         (1462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containi...   669   0.0  
ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containi...   647   0.0  
ref|XP_002532046.1| pentatricopeptide repeat-containing protein,...   645   0.0  
ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containi...   643   0.0  
ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|2...   631   e-178

>ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic [Vitis vinifera]
            gi|296082481|emb|CBI21486.3| unnamed protein product
            [Vitis vinifera]
          Length = 489

 Score =  669 bits (1725), Expect = 0.0
 Identities = 331/422 (78%), Positives = 374/422 (88%)
 Frame = +1

Query: 1    ILRNFSDKKPLLVTLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADN 180
            +++NF  ++PL+ TL+KYVK+IRTEHCF LFEELGK DKWLQCLEVFRWMQKQRWY+ADN
Sbjct: 75   LMKNFGGERPLISTLNKYVKVIRTEHCFRLFEELGKTDKWLQCLEVFRWMQKQRWYIADN 134

Query: 181  GVYSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKALG 360
            GVYSKLISVMGKKGQ RMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKAL KALG
Sbjct: 135  GVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALG 194

Query: 361  YFEKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDAY 540
            YF+KMKG+ERC+PNIVTYNILLRAFAQA+ V+Q N L K+L ESIVSPDI+T+NG+MDAY
Sbjct: 195  YFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAY 254

Query: 541  GKNGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPTL 720
            GKNGMI+EMESVLS MKSNQ KPD+ITFN+LIDSYGRRQ FDKMEQVFKSLLRSKEKPTL
Sbjct: 255  GKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTL 314

Query: 721  PTFNSMITNYGKARLKEKAESVFKKISDMGYKPSYVTYESLITTYGVCDCVSKARGIFDE 900
            PTFNSMITNYGKARLKEKAE+VFKK++DMGY P+++TYESLI  YG CDC+S+AR IFDE
Sbjct: 315  PTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDE 374

Query: 901  MMESKKGLLQISTLNAMLDVYCMNGLPTEADQLFEYAQKNGVLPDASTYKLLYKAYTKAN 1080
            MM SKK  +++STLNAML+VYCMNGLP EAD L E A+KN   P +STYKLLYKAYTKA+
Sbjct: 375  MMASKKE-MKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAYTKAD 433

Query: 1081 MKELVQKLVKYMENSGIVPNKKFFLEALGAFGSSQAGGSESNRSATGSTRSKITTPRISA 1260
             KEL++KL+K M++ GI+PNK+FFLEALGAFGSS A   ES  S TG TR     PR SA
Sbjct: 434  QKELLEKLLKLMDSDGILPNKRFFLEALGAFGSSPA-SQESAGSTTGLTR-----PRNSA 487

Query: 1261 KT 1266
            KT
Sbjct: 488  KT 489


>ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  647 bits (1669), Expect = 0.0
 Identities = 318/420 (75%), Positives = 366/420 (87%)
 Frame = +1

Query: 1    ILRNFSDKKPLLVTLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADN 180
            I+RNFSDK+PLL TLDKYV+++RTEHCF LFEELGKRDKWL+CLEVFRWMQKQRWY+ADN
Sbjct: 68   IIRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADN 127

Query: 181  GVYSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKALG 360
            GVYSKLIS+MGKKGQ+RMAMWLFSEMRNSGCRPDTSVYNALITAHLHS+DK+KAL K L 
Sbjct: 128  GVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLS 187

Query: 361  YFEKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDAY 540
            YFEKMKG+ERC+PNIVTYNIL RAFAQA KVDQVN L KDL+ES+VS DIYTYNG+MDAY
Sbjct: 188  YFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAY 247

Query: 541  GKNGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPTL 720
            GKNG I+EME +L+ MKSNQ+KPD+I+FNLLIDSYG++Q FDKMEQVFKSLLRSKE+PTL
Sbjct: 248  GKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTL 307

Query: 721  PTFNSMITNYGKARLKEKAESVFKKISDMGYKPSYVTYESLITTYGVCDCVSKARGIFDE 900
            PTFNSMITNYGKARL+EKAE VF+K+ DMGY PSYVT ESLI  YG CDCVSKAR IFD 
Sbjct: 308  PTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDG 367

Query: 901  MMESKKGLLQISTLNAMLDVYCMNGLPTEADQLFEYAQKNGVLPDASTYKLLYKAYTKAN 1080
            M+ S K  +++STLNAMLDVYC+NGLP EAD LFE A    V PD++TYKLLYKAYTKA+
Sbjct: 368  MVNSGKE-VRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKAD 426

Query: 1081 MKELVQKLVKYMENSGIVPNKKFFLEALGAFGSSQAGGSESNRSATGSTRSKITTPRISA 1260
             KEL++KL+K M+ +GI+PNK+FFL+ALG  GSSQ    E  R+ TGS  S  +  + S+
Sbjct: 427  KKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSSQE-KPEPARTRTGSRNSDSSVEKQSS 485


>ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223528289|gb|EEF30336.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 478

 Score =  645 bits (1663), Expect = 0.0
 Identities = 316/408 (77%), Positives = 366/408 (89%), Gaps = 2/408 (0%)
 Frame = +1

Query: 1    ILRNFS-DKKPLLVTLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVAD 177
            +LR+FS DK PL+ TLDKYV+++RTEHCF LFEELG+RDKWLQCLEVFRWMQKQRWY+AD
Sbjct: 72   VLRSFSSDKVPLVRTLDKYVRVVRTEHCFLLFEELGRRDKWLQCLEVFRWMQKQRWYIAD 131

Query: 178  NGVYSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKAL 357
            +GVYSKLISVMGKKGQ RMAMWLFSEMRNSGCRPD+SVYNALITAHLHS+DK+KAL KAL
Sbjct: 132  SGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKAL 191

Query: 358  GYFEKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDA 537
            GYFEKMKG++RCQPN+VTYNILLRAFAQAR V+QVN L KDL++SIVSPDIYTYNG+MDA
Sbjct: 192  GYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDA 251

Query: 538  YGKNGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPT 717
            YGKNGMIREMESVLS MKSNQ KPD+ITFNLLIDSYG++Q FDKMEQVFKSLL SKE+PT
Sbjct: 252  YGKNGMIREMESVLSRMKSNQCKPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPT 311

Query: 718  LPTFNSMITNYGKARLKEKAESVFKKISDMGYKPSYVTYESLITTYGVCDCVSKARGIFD 897
            LPTFNSMITNYGKAR KE AESV +K++ M Y P+++TYESLI  YG CD VSKAR IFD
Sbjct: 312  LPTFNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFD 371

Query: 898  EMMESKKGLLQISTLNAMLDVYCMNGLPTEADQLFEYAQKNGVLPDASTYKLLYKAYTKA 1077
            +M+ES K  +++STLNAMLDVYC+NGLP EAD LF+ A+  G+LPD++TYKLLYKAYTKA
Sbjct: 372  DMIESGKE-VKVSTLNAMLDVYCLNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKA 430

Query: 1078 NMKELVQKLVKYMENSGIVPNKKFFLEALGAFGSSQA-GGSESNRSAT 1218
            NMK+LVQKL+K+M+  GI+PNK+FFL+ALGAF S  A  G++ N + T
Sbjct: 431  NMKKLVQKLLKHMDRDGIIPNKRFFLDALGAFKSLPASSGNQQNNAKT 478


>ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  643 bits (1659), Expect = 0.0
 Identities = 311/395 (78%), Positives = 355/395 (89%)
 Frame = +1

Query: 1    ILRNFSDKKPLLVTLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADN 180
            I+RNFSDK+PLL TLDKYV+++RTEHCF LFEELGKRDKWL+CLEVFRWMQKQRWY+ADN
Sbjct: 68   IIRNFSDKEPLLKTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADN 127

Query: 181  GVYSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKALG 360
            GVYSKLIS+MGKKGQ+RMAMWLFSEMRNSGCRPDTSVYNALITAHLHS+DK+KAL K L 
Sbjct: 128  GVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLS 187

Query: 361  YFEKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDAY 540
            YFEKMKG+ERC+PNIVTYNIL RAFAQA KVDQVN L KDL+ES+VS DIYTYNG+MDAY
Sbjct: 188  YFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAY 247

Query: 541  GKNGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPTL 720
            GKNG I+EME +L+ MKSNQ+KPD+I+FNLLIDSYG++Q FDKMEQVFKSLLRSKE+PTL
Sbjct: 248  GKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTL 307

Query: 721  PTFNSMITNYGKARLKEKAESVFKKISDMGYKPSYVTYESLITTYGVCDCVSKARGIFDE 900
            PTFNSMITNYGKARL+EKAE VF+K+ DMGY PSYVT ESLI  YG CDCVSKAR IFD 
Sbjct: 308  PTFNSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDG 367

Query: 901  MMESKKGLLQISTLNAMLDVYCMNGLPTEADQLFEYAQKNGVLPDASTYKLLYKAYTKAN 1080
            M+ S K  +++STLNAMLDVYC+NGLP EAD LFE A    V PD++TYKLLYKAYTKA+
Sbjct: 368  MVNSGKE-VRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKAD 426

Query: 1081 MKELVQKLVKYMENSGIVPNKKFFLEALGAFGSSQ 1185
             KEL++KL+K M+ +GI+PNK+FFL+ALG  GSSQ
Sbjct: 427  KKELLEKLLKNMDKAGIIPNKRFFLDALGTIGSSQ 461



 Score = 57.4 bits (137), Expect = 9e-06
 Identities = 45/200 (22%), Positives = 87/200 (43%)
 Frame = +1

Query: 187 YSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKALGYF 366
           ++ LI   GKK        +F  +  S  RP    +N++IT +     K++   KA   F
Sbjct: 275 FNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNY----GKARLREKAEEVF 330

Query: 367 EKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDAYGK 546
            KMK +    P+ VT   L+  +     V +   +   +  S     + T N M+D Y  
Sbjct: 331 RKMKDMGY-DPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYCI 389

Query: 547 NGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPTLPT 726
           NG+  E + +  +  + +V PD  T+ LL  +Y +    + +E++ K++ ++   P    
Sbjct: 390 NGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPNKRF 449

Query: 727 FNSMITNYGKARLKEKAESV 786
           F   +   G ++  +  + +
Sbjct: 450 FLDALGTIGSSQENQNLQEL 469


>ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1|
            predicted protein [Populus trichocarpa]
          Length = 416

 Score =  631 bits (1627), Expect = e-178
 Identities = 306/388 (78%), Positives = 352/388 (90%)
 Frame = +1

Query: 1    ILRNFSDKKPLLVTLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADN 180
            ++R+FSDK+PL+ TL+KYVK++RTEHCF LFEELGK DKWLQCLEVFRWMQKQRWYVADN
Sbjct: 30   LVRSFSDKQPLVKTLNKYVKVMRTEHCFMLFEELGKTDKWLQCLEVFRWMQKQRWYVADN 89

Query: 181  GVYSKLISVMGKKGQLRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALAKALG 360
            G YSKLISVMGKKGQ RMAMWLFSEMRNSGCRPDTSVYNALITAHLHS+DK+K+L KAL 
Sbjct: 90   GCYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALA 149

Query: 361  YFEKMKGIERCQPNIVTYNILLRAFAQARKVDQVNVLLKDLEESIVSPDIYTYNGMMDAY 540
            YFEKMK IERCQPN+VTYNI+LRAFAQAR V+QVN L KDLEESIVSPDIYTYNG++DAY
Sbjct: 150  YFEKMKSIERCQPNVVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAY 209

Query: 541  GKNGMIREMESVLSNMKSNQVKPDVITFNLLIDSYGRRQAFDKMEQVFKSLLRSKEKPTL 720
            GKNGMIREMESVLS MK +Q KPD+ITFNLLIDSYG++Q F+KMEQVFKSLLRSKEKPTL
Sbjct: 210  GKNGMIREMESVLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTL 269

Query: 721  PTFNSMITNYGKARLKEKAESVFKKISDMGYKPSYVTYESLITTYGVCDCVSKARGIFDE 900
            PTFNSMI NYGKARLK+KAESVFKK++DM Y PS++T+ESLI  YG+CDCVSKAR IFD+
Sbjct: 270  PTFNSMIVNYGKARLKDKAESVFKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDD 329

Query: 901  MMESKKGLLQISTLNAMLDVYCMNGLPTEADQLFEYAQKNGVLPDASTYKLLYKAYTKAN 1080
            M+ES K  +++STLNA+L+VYCMNGL  EA  L E A+  GV P++STYKLLY+AYTKA 
Sbjct: 330  MVESGKE-VKVSTLNAVLNVYCMNGLHMEAHILLENARSIGVPPNSSTYKLLYRAYTKAK 388

Query: 1081 MKELVQKLVKYMENSGIVPNKKFFLEAL 1164
            MKELVQKL+K+M+  GI+PNK+FF++AL
Sbjct: 389  MKELVQKLLKHMDKDGIIPNKRFFVDAL 416