BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031166
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]               81   1e-13
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    70   1e-10
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...    66   3e-09
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    64   1e-08
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    64   1e-08

>gb|AAF17675.1|AC009243_2 F28K19.3 [Arabidopsis thaliana]
          Length = 238

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 47/108 (43%), Positives = 64/108 (59%)
 Frame = -2

Query: 353 LSWNCRGLGLDQTVLDIKYFISLHRPGLVFLSETKCSVDRCRTVCSKLGNSWSCFSVPSV 174
           L WNC+GLG+D TV  +K     + P ++ LSETK   D  R  C +LG S +   VPS+
Sbjct: 57  LCWNCQGLGIDLTVRRLKEINRKYLPDVICLSETKQRNDYVRDTCCELGFS-NFVMVPSM 115

Query: 173 GLSGGLCVFWQPVLVNVRVLFSDVRIIHLGLVFNEVSFSLSCVYASCN 30
           GLSGGL V W+P  V++ V F+   ++   +  NEV F+LS VY   N
Sbjct: 116 GLSGGLVVLWKP-SVHISVSFNSPNLVDCYVQSNEVGFNLSFVYGHPN 162


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/107 (37%), Positives = 61/107 (57%)
 Frame = -2

Query: 362 MSILSWNCRGLGLDQTVLDIKYFISLHRPGLVFLSETKCSVDRCRTVCSKLGNSWSCFSV 183
           M ILSWNC+G+G   TV  ++    L+ P ++FL ETK   +    V   LG  +   +V
Sbjct: 1   MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLG-FFDLHTV 59

Query: 182 PSVGLSGGLCVFWQPVLVNVRVLFSDVRIIHLGLVFNEVSFSLSCVY 42
             +G SGGL + W+   V ++VL SD R+I   L++ +  F L+C+Y
Sbjct: 60  EPIGKSGGLALMWKD-SVQIKVLQSDKRLIDALLIWQDKEFYLTCIY 105


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/89 (40%), Positives = 53/89 (59%)
 Frame = -2

Query: 362 MSILSWNCRGLGLDQTVLDIKYFISLHRPGLVFLSETKCSVDRCRTVCSKLGNSWSCFSV 183
           M+IL WNCRG+G  +TV  ++ + + + P ++FLSET  +      + S+LG + + F V
Sbjct: 1   MNILCWNCRGVGNPRTVRQLRKWSTFYAPDIMFLSETMINKTESEALKSRLGFA-NAFGV 59

Query: 182 PSVGLSGGLCVFWQPVLVNVRVLFSDVRI 96
            S G +GGLCVFW+  L    V FS   I
Sbjct: 60  SSRGRAGGLCVFWREELSFSLVSFSQHHI 88


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 38/107 (35%), Positives = 61/107 (57%)
 Frame = -2

Query: 362 MSILSWNCRGLGLDQTVLDIKYFISLHRPGLVFLSETKCSVDRCRTVCSKLGNSWSCFSV 183
           M +  WNC+GLG   TV  ++    ++   ++FL ETK   +  R +  K+G    C   
Sbjct: 363 MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIIS 422

Query: 182 PSVGLSGGLCVFWQPVLVNVRVLFSDVRIIHLGLVFNEVSFSLSCVY 42
           P  GLSGGL V+W+  L +++V+  DVR++ L + +   +F LSC+Y
Sbjct: 423 PR-GLSGGLVVYWKKHL-SIQVISHDVRLVDLYVEYKNFNFYLSCIY 467


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
 Frame = -2

Query: 362 MSILSWNCRGLGLDQ--TVLDIKYFISLHRPGLVFLSETKCSVDRCRTVCSKLGNSW--- 198
           MS++SWNC+GLG  Q  T+  +      H P ++FL ETK     C  V   L   W   
Sbjct: 1   MSLVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETK----NCSNVVVDL-QEWLGY 55

Query: 197 -SCFSVPSVGLSGGLCVFWQPVLVNVRVLFSDVRIIHLGLVFNEVSFSLSCVYASCNF 27
              F+V  +GLSGGL +FW+   V++ + ++D  +I   + F    F +SCVY +  F
Sbjct: 56  ERVFTVNPIGLSGGLALFWKKG-VDIVIKYADKNLIDFQIQFGSHEFYVSCVYGNPAF 112