BLASTX nr result

ID: Cimicifuga21_contig00031043 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00031043
         (386 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16
emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]    89   5e-16
gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]        79   3e-13
ref|XP_002327818.1| predicted protein [Populus trichocarpa] gi|2...    79   3e-13
gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]           79   4e-13

>ref|XP_002271426.1| PREDICTED: pentatricopeptide repeat-containing protein At4g36680,
           mitochondrial-like [Vitis vinifera]
          Length = 414

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 43/74 (58%), Positives = 56/74 (75%)
 Frame = -2

Query: 223 TSSIASNIDQDLTFRRLAKSQKTAEIEKIVDCQKKDPRITQEDYFSTVIRSCGFAGMSDY 44
           TS +AS   QDLT +RLAKS++ A+IE +++  K DP+ITQE Y ST+IRS G AGM  +
Sbjct: 65  TSPLASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYGIAGMFQH 124

Query: 43  ARRLYDQMEELGTP 2
           A R ++QMEELGTP
Sbjct: 125 ALRTFNQMEELGTP 138


>emb|CAN68320.1| hypothetical protein VITISV_032192 [Vitis vinifera]
          Length = 416

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 43/74 (58%), Positives = 56/74 (75%)
 Frame = -2

Query: 223 TSSIASNIDQDLTFRRLAKSQKTAEIEKIVDCQKKDPRITQEDYFSTVIRSCGFAGMSDY 44
           TS +AS   QDLT +RLAKS++ A+IE +++  K DP+ITQE Y ST+IRS G AGM  +
Sbjct: 67  TSPLASRYAQDLTVKRLAKSRRFADIETLIESHKNDPKITQEPYLSTLIRSYGIAGMFQH 126

Query: 43  ARRLYDQMEELGTP 2
           A R ++QMEELGTP
Sbjct: 127 ALRTFNQMEELGTP 140


>gb|AEI98618.1| hypothetical protein 111O18.5 [Coffea canephora]
          Length = 417

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 6/134 (4%)
 Frame = -2

Query: 385 RHYRLFSATTTTSPLNIRLFSATTTTSPLTIRL------FXXXXXXXXXXXXANEVADTD 224
           RH    +A    + +     S  T+T P TI                      + V+   
Sbjct: 11  RHLSTSAAAAAAAAVEAAGASTATSTKPSTISTSRAKSQLRYVYDPDKALEIYSSVSPNY 70

Query: 223 TSSIASNIDQDLTFRRLAKSQKTAEIEKIVDCQKKDPRITQEDYFSTVIRSCGFAGMSDY 44
           TS ++S   Q+ T RRLAKS + ++IE  ++  K DP+ITQE + S++IRS G AGM D+
Sbjct: 71  TSPLSSRYTQEYTVRRLAKSHRFSDIESFLESHKNDPKITQEPFLSSLIRSYGLAGMFDH 130

Query: 43  ARRLYDQMEELGTP 2
           A + +++M++LGTP
Sbjct: 131 ALKTFNEMDDLGTP 144


>ref|XP_002327818.1| predicted protein [Populus trichocarpa] gi|222836903|gb|EEE75296.1|
           predicted protein [Populus trichocarpa]
          Length = 397

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 38/78 (48%), Positives = 54/78 (69%)
 Frame = -2

Query: 235 ADTDTSSIASNIDQDLTFRRLAKSQKTAEIEKIVDCQKKDPRITQEDYFSTVIRSCGFAG 56
           ++ D+S  AS   QDLT RRLA S +  +IE +++ +K DP+I QE + S++IRS G AG
Sbjct: 46  SNNDSSPAASRYAQDLTVRRLATSHRFTDIESLIESRKTDPKIKQEPFLSSLIRSYGVAG 105

Query: 55  MSDYARRLYDQMEELGTP 2
           M D A + Y QM++LGTP
Sbjct: 106 MFDQAMKTYHQMDQLGTP 123


>gb|ABU45192.1| unknown [Petunia integrifolia subsp. inflata]
          Length = 406

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 4/132 (3%)
 Frame = -2

Query: 385 RHYRLFSATTTTSPLNIRLFSATTTTSPLTIRL----FXXXXXXXXXXXXANEVADTDTS 218
           RH R  S TT  +       + T+TT+ ++I                    + V+D   S
Sbjct: 8   RHARHLSTTTAAA-------ATTSTTATISISKAKSKLKAEHDPDKVLEIYSSVSDRYIS 60

Query: 217 SIASNIDQDLTFRRLAKSQKTAEIEKIVDCQKKDPRITQEDYFSTVIRSCGFAGMSDYAR 38
            ++S   Q+ T +RLAKS + ++IE  ++  K   +ITQE + S++IRS G AGM D+A 
Sbjct: 61  PLSSRYAQEYTVKRLAKSHRFSDIESFLESHKNSSKITQEPFLSSIIRSYGIAGMFDHAL 120

Query: 37  RLYDQMEELGTP 2
           ++YDQM++LGTP
Sbjct: 121 KIYDQMDDLGTP 132


Top