BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030468
         (707 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi...   214   1e-53
ref|XP_002519945.1| pentatricopeptide repeat-containing protein,...   206   4e-51
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi...   201   1e-49
ref|XP_003612457.1| Pentatricopeptide repeat-containing protein ...   197   2e-48
gb|AFK33630.1| unknown [Lotus japonicus]                              194   2e-47

>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Vitis vinifera]
          Length = 414

 Score =  214 bits (546), Expect = 1e-53
 Identities = 117/234 (50%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
 Frame = +3

Query: 9   LFKQMYQQQHELLEKSTRGLIVDCVLRACVGIGDIGLGKQVHGLVLKMKNKEDCDLFVGS 188
           LF QM  + H  +       I  CVL+ACV   ++ LGKQVHG +LK+    +  LF+  
Sbjct: 167 LFVQM-MELHSTIMLELPAWIFICVLKACVHTMNLTLGKQVHGWLLKVGYATN--LFLSC 223

Query: 189 LFINFYGKLGCIRSARRIFDKMEMRDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGARK 368
             I+FYGK  C+  A  +FD+   R+TVIWTA +V   + E+  E L  F  MGRAG ++
Sbjct: 224 YLISFYGKFRCLDDADFVFDQTSERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKR 283

Query: 369 NNFTLSSVIRACGRMGDEG-SGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKA 545
           N FT SSV+RACGRM D G  GR +H + IKLG+ESD +VQC LVDMYGKCG++ +AR+ 
Sbjct: 284 NEFTYSSVLRACGRMKDHGRCGRLIHASTIKLGLESDIYVQCGLVDMYGKCGLLVEARRV 343

Query: 546 FEMTSVMGYKKRRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQPPESLLD 707
           FE  S      + N VCWNAMLT Y+++G   EAIK LYQMK+ G+QP ESLL+
Sbjct: 344 FETVS---DTNKTNIVCWNAMLTGYIRHGLYIEAIKFLYQMKAAGIQPQESLLN 394



 Score = 77.0 bits (188), Expect = 3e-12
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 6/170 (3%)
 Frame = +3

Query: 204 YGKLGCIRSARRIFDKMEM--RDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGA----R 365
           Y   G I +AR +FDKM +  ++++ W  M+  Y     +EE + LF  M    +     
Sbjct: 122 YVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEEAIFLFVQMMELHSTIMLE 181

Query: 366 KNNFTLSSVIRACGRMGDEGSGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKA 545
              +    V++AC    +   G+QVHG  +K+G  ++ F+ C L+  YGK   ++DA   
Sbjct: 182 LPAWIFICVLKACVHTMNLTLGKQVHGWLLKVGYATNLFLSCYLISFYGKFRCLDDADFV 241

Query: 546 FEMTSVMGYKKRRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQPPE 695
           F+ TS       RN V W A +    Q  +  EA+    +M   GV+  E
Sbjct: 242 FDQTS------ERNTVIWTAKMVNKCQGEYMHEALVAFTEMGRAGVKRNE 285


>ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540991|gb|EEF42549.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 403

 Score =  206 bits (524), Expect = 4e-51
 Identities = 103/223 (46%), Positives = 148/223 (66%), Gaps = 1/223 (0%)
 Frame = +3

Query: 42  LLEKSTRGLIVDCVLRACVGIGDIGLGKQVHGLVLKMKNKEDCDLFVGSLFINFYGKLGC 221
           + + +T  +I+ C+++ C+   +I LGKQVHG++ K+    +    V    ++FYGKLGC
Sbjct: 178 MFDLNTWNIIILCIIKCCIYSMNISLGKQVHGILFKVGLTSEISFNVS--LMDFYGKLGC 235

Query: 222 IRSARRIFDKMEMRDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGARKNNFTLSSVIRA 401
           +     +F+K++  +T  WTA IV   + + F EV+E FK MG AG ++N+FT+SSV+RA
Sbjct: 236 LEDVNSVFNKLDNHNTATWTAKIVNSCRNQRFYEVIEDFKEMGEAGIKRNSFTVSSVLRA 295

Query: 402 CGRMGDEGS-GRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKAFEMTSVMGYKK 578
           C RMGD G+ G+QVH   IKLG+ESD FVQC L+ MYGKCGM+  A+K FE+        
Sbjct: 296 CARMGDGGNCGKQVHVIVIKLGLESDAFVQCGLIAMYGKCGMIRKAKKVFELVI-----D 350

Query: 579 RRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQPPESLLD 707
           + N  CWNA+L AY++N    EA+KLLYQM++  +Q  ESLLD
Sbjct: 351 KTNTACWNALLMAYVRNELFIEAMKLLYQMEAAKIQVNESLLD 393


>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Glycine max]
          Length = 423

 Score =  201 bits (511), Expect = 1e-49
 Identities = 104/211 (49%), Positives = 140/211 (66%), Gaps = 2/211 (0%)
 Frame = +3

Query: 78  CVLRACVGIGDIGLGKQVHGLVLKMKNKEDCD-LFVGSLFINFYGKLGCIRSARRIFDKM 254
           C+LRAC    ++ LG QVHG +LK+     CD + + S  INFYG+  C+  A  +FD +
Sbjct: 205 CLLRACACTVNVPLGMQVHGWLLKLGT---CDHVLLSSSLINFYGRFTCLEDASVVFDGV 261

Query: 255 EMRDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGARKNNFTLSSVIRACGRM-GDEGSG 431
              +T+ WTA IV   +E HF EV + FK MG  G +K+ FT SSV++ACGRM   E  G
Sbjct: 262 SRHNTLTWTAKIVSGCRERHFSEVFDDFKEMGMRGVKKDCFTFSSVLKACGRMLNQERCG 321

Query: 432 RQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKAFEMTSVMGYKKRRNDVCWNAML 611
            QVH +AIKLG+ SD +VQCSL+ MYG+CG++ DA++ FEM+     ++ R   CWNAML
Sbjct: 322 EQVHVDAIKLGLVSDHYVQCSLIAMYGRCGLLEDAKRVFEMS-----QEERKVDCWNAML 376

Query: 612 TAYMQNGFCDEAIKLLYQMKSNGVQPPESLL 704
             Y+QNG   EA+K LYQM++ G+QP ESLL
Sbjct: 377 MGYIQNGLYIEAVKFLYQMQAAGMQPRESLL 407



 Score = 66.2 bits (160), Expect = 6e-09
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
 Frame = +3

Query: 177 FVGSLFINFYGKLGCIRSARRIFDKMEMRDTVIWTAMIVVYSKEEHFEEVLELF-KMMGR 353
           F+  + + F    G + +AR +FDKM +RD   W  + V Y     +EE   +F  M+ +
Sbjct: 134 FLNRILVMFVS-CGLLENARHMFDKMRVRDFNTWATLFVAYYDNTDYEEATNVFVNMLTQ 192

Query: 354 AGARK-NNFTLSSVIRACGRMGDEGSGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVN 530
            G  +   +  + ++RAC    +   G QVHG  +KLG      +  SL++ YG+   + 
Sbjct: 193 LGMMEFPPWIWACLLRACACTVNVPLGMQVHGWLLKLGTCDHVLLSSSLINFYGRFTCLE 252

Query: 531 DARKAFEMTSVMGYKKRRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQ 686
           DA   F+  S      R N + W A + +  +     E      +M   GV+
Sbjct: 253 DASVVFDGVS------RHNTLTWTAKIVSGCRERHFSEVFDDFKEMGMRGVK 298


>ref|XP_003612457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513792|gb|AES95415.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 418

 Score =  197 bits (501), Expect = 2e-48
 Identities = 103/215 (47%), Positives = 140/215 (65%), Gaps = 2/215 (0%)
 Frame = +3

Query: 69  IVDCVLRACVGIGDIGLGKQVHGLVLKMKNKEDCD-LFVGSLFINFYGKLGCIRSARRIF 245
           I  C+L+AC    ++ LG QVHG +LK+     CD + + S  I FYG+  C+  A  +F
Sbjct: 197 IWSCLLKACACTMNVPLGMQVHGCLLKLGA---CDHVLISSSLIRFYGRFKCLEDANMVF 253

Query: 246 DKMEMRDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGARKNNFTLSSVIRACGRMGDEG 425
           +++   +T+ WTA IV   +E HF E L  FK MGR G +K++FT SSV++ACGRM + G
Sbjct: 254 NRVSRHNTLTWTAKIVSSCRERHFSEALGDFKKMGRVGVKKDSFTFSSVLKACGRMQNRG 313

Query: 426 S-GRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKAFEMTSVMGYKKRRNDVCWN 602
           S G QVH +AIKLG++SD +VQCSL+ MYG+ G++ DA   FEMT     +  RN    N
Sbjct: 314 SCGEQVHADAIKLGLDSDSYVQCSLIAMYGRSGLLRDAELVFEMT-----RNERNVDSLN 368

Query: 603 AMLTAYMQNGFCDEAIKLLYQMKSNGVQPPESLLD 707
           AML  Y+QNG   EA+K +YQMK+ GVQP E LL+
Sbjct: 369 AMLMGYIQNGLYIEAVKFVYQMKAAGVQPHEPLLE 403



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 4/161 (2%)
 Frame = +3

Query: 216 GCIRSARRIFDKMEMRDTVIWTAMIVVYSKEEHFEEVLELFKMM----GRAGARKNNFTL 383
           G + +ARR+FD M +RD   W  + V Y +   +E  +++F  M       G     +  
Sbjct: 139 GLLENARRVFDVMSVRDFHSWATLFVSYYENGEYENAIDVFVSMLCQLDVMGFSFPPWIW 198

Query: 384 SSVIRACGRMGDEGSGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKAFEMTSV 563
           S +++AC    +   G QVHG  +KLG      +  SL+  YG+   + DA   F   S 
Sbjct: 199 SCLLKACACTMNVPLGMQVHGCLLKLGACDHVLISSSLIRFYGRFKCLEDANMVFNRVS- 257

Query: 564 MGYKKRRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQ 686
                R N + W A + +  +     EA+    +M   GV+
Sbjct: 258 -----RHNTLTWTAKIVSSCRERHFSEALGDFKKMGRVGVK 293


>gb|AFK33630.1| unknown [Lotus japonicus]
          Length = 356

 Score =  194 bits (492), Expect = 2e-47
 Identities = 101/215 (46%), Positives = 139/215 (64%), Gaps = 2/215 (0%)
 Frame = +3

Query: 69  IVDCVLRACVGIGDIGLGKQVHGLVLKMKNKEDCD-LFVGSLFINFYGKLGCIRSARRIF 245
           I  C L+AC  I +I LG QVHG +LK+     CD + + S  I FYG+  C++ A  +F
Sbjct: 135 ICACFLKACACIENIPLGMQVHGWLLKLGT---CDHVLLSSSLIRFYGRFTCVKDANAVF 191

Query: 246 DKMEMRDTVIWTAMIVVYSKEEHFEEVLELFKMMGRAGARKNNFTLSSVIRACGRMGDEG 425
           +K+   +T  WTA IV   +E  F EV   FK MGR G +K+ +T SSV++ACG+M D G
Sbjct: 192 NKLSRHNTSTWTAKIVSGCREMDFPEVFNDFKEMGRQGIKKDTYTFSSVLKACGKMMDHG 251

Query: 426 -SGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVNDARKAFEMTSVMGYKKRRNDVCWN 602
             G QVH +A+KLG+ SD +VQCSL+ MYG+ G++ DA++ FE +     +  RN   WN
Sbjct: 252 RCGEQVHADAMKLGLASDNYVQCSLIAMYGRSGLLRDAKQVFETS-----RSERNVDSWN 306

Query: 603 AMLTAYMQNGFCDEAIKLLYQMKSNGVQPPESLLD 707
           AML  Y++NG   EA+K LYQMK+ G++P ESLLD
Sbjct: 307 AMLMGYLENGLYIEAVKFLYQMKAAGLKPHESLLD 341



 Score = 56.6 bits (135), Expect = 5e-06
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 2/172 (1%)
 Frame = +3

Query: 177 FVGSLFINFYGKLGCIRSARRIFDKMEMRDTVIWTAMIVVYSKEEHFEEVLELF-KMMGR 353
           F+  + + F    G +  A ++FD M ++D   W  + + Y     +EE +++F  M+ +
Sbjct: 67  FINRILVMFVS-CGLLDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVFLAMLHQ 125

Query: 354 AGARK-NNFTLSSVIRACGRMGDEGSGRQVHGNAIKLGIESDQFVQCSLVDMYGKCGMVN 530
            G  +   +  +  ++AC  + +   G QVHG  +KLG      +  SL+  YG+   V 
Sbjct: 126 LGMSEFPPWICACFLKACACIENIPLGMQVHGWLLKLGTCDHVLLSSSLIRFYGRFTCVK 185

Query: 531 DARKAFEMTSVMGYKKRRNDVCWNAMLTAYMQNGFCDEAIKLLYQMKSNGVQ 686
           DA   F   S      R N   W A + +  +     E      +M   G++
Sbjct: 186 DANAVFNKLS------RHNTSTWTAKIVSGCREMDFPEVFNDFKEMGRQGIK 231