BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030371
         (1629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   646   0.0  
ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   632   e-179
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   597   e-168
ref|XP_002522032.1| pentatricopeptide repeat-containing protein,...   594   e-167
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   581   e-163

>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
            gi|449518358|ref|XP_004166209.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  646 bits (1666), Expect = 0.0
 Identities = 308/429 (71%), Positives = 363/429 (84%), Gaps = 5/429 (1%)
 Frame = +2

Query: 170  STNTINGQT--SKDDYFAAIHHISNIVRRDFYMERTLQKMQIT-VTSELVYRVLRSCNKS 340
            S + +NG T  SKDDYFAAIHHIS+IVRRDFYMERTL K++I+ + SELV+RVLR+C+ S
Sbjct: 26   SNSLVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNS 85

Query: 341  GIESFRFFNWA-RNQPRYEPTTLEFEELIKTLGKNRNWETMWKVAEQMKKLGFNLTPDTF 517
            G ESFRFFNWA  + P Y+PTTLEFEEL+KTL + R + TMWKV  QMK     ++P+T 
Sbjct: 86   GTESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETI 145

Query: 518  SLIIESYGKHGLVDKAVEVFNRM-KNFDCEQNTQVYNALLFALCEVKNFQGAYALIRRMI 694
            S II+ YGK GLVD AV +FN+  K+ DC Q  +VYNALLFALCEVK F GAYALIRRMI
Sbjct: 146  SFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMI 205

Query: 695  RKGGVPDKRTYAVLVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLNAGYLE 874
            RKG  PDK+TY  LV GWCSAGK+KEAQ+FLEEMS+KGFNPP+RGRDLL++GLLNAGYLE
Sbjct: 206  RKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLE 265

Query: 875  SAKGLVRKMTKEGYLPDISTFNSLLEALCNAGEIDFCINLLRDVCKLGLFPDISTYKVMV 1054
            SAK +VRKMTKEG +PDI TFNSL++ +CN+GE+DFCIN+  +VCKLGL PDI+TYK+++
Sbjct: 266  SAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILI 325

Query: 1055 PAVSKLGRMDEAFRLLYCSIEDGQKPFPSLYAPILKGLCRVGQFDDAFSFFGDMKAQGHA 1234
            PA SK+GR+DEAFRLL+C IEDG  PFPSLY PILKG+C+ GQFDDAF FFGDMK +GH 
Sbjct: 326  PATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHP 385

Query: 1235 PNRPVYTMLIKMCARGGRFVEAANYLMEMTELDLSPKSQCFDMITDGLKNCGKHDLAKRI 1414
            PNRPVYTMLI MC RGGRFV+AANYLMEM EL L P S+CFDM+TDGLKNCGKHDLAK+I
Sbjct: 386  PNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKI 445

Query: 1415 EQLEISLRG 1441
            EQLE+S+RG
Sbjct: 446  EQLEVSIRG 454


>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial [Vitis vinifera]
            gi|296085168|emb|CBI28663.3| unnamed protein product
            [Vitis vinifera]
          Length = 454

 Score =  632 bits (1631), Expect = e-179
 Identities = 305/444 (68%), Positives = 367/444 (82%), Gaps = 1/444 (0%)
 Frame = +2

Query: 113  NPSFFLYHSLKTLTPEPHQSTNTINGQTSKDDYFAAIHHISNIVRRDFYMERTLQKMQIT 292
            +P+  +   LKTLT       NTI  +  KDDYFA +HHIS IVRRDFY+ERTL K+ I+
Sbjct: 16   SPASPILTHLKTLTTITTHLQNTITSK--KDDYFAVVHHISAIVRRDFYLERTLNKLPIS 73

Query: 293  VTSELVYRVLRSCNKSGIESFRFFNWARNQPRYEPTTLEFEELIKTLGKNRNWETMWKVA 472
            VTS+LVYRVLRSC  SG ES RFFNWAR+   Y+PTTLE+EEL+KTL + + ++ MWK+A
Sbjct: 74   VTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPMWKIA 133

Query: 473  EQMKKLGFNLTPDTFSLIIESYGKHGLVDKAVEVFNRMKN-FDCEQNTQVYNALLFALCE 649
             QM+     L+P   S IIE +GKHGLVD+AVEVFN+ K+  +C Q  +VYN+LLFALCE
Sbjct: 134  HQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLFALCE 189

Query: 650  VKNFQGAYALIRRMIRKGGVPDKRTYAVLVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRG 829
            VK F GAYALIRRMIRKG  P+K+TY+VLVNGWC+AGK+KEAQDFLEEMSRKGFNPPVRG
Sbjct: 190  VKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRG 249

Query: 830  RDLLIDGLLNAGYLESAKGLVRKMTKEGYLPDISTFNSLLEALCNAGEIDFCINLLRDVC 1009
            RDLL+DGLLNAGYLE+AK +VRKMTKEG  PD+ T NS+LEA+C AGE +FCI++  DVC
Sbjct: 250  RDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYNDVC 309

Query: 1010 KLGLFPDISTYKVMVPAVSKLGRMDEAFRLLYCSIEDGQKPFPSLYAPILKGLCRVGQFD 1189
            +LG+ P++ TYK+M+PA  K GR+DEAFR+L+ SIEDG +PFPSLYAPI+K LCR GQFD
Sbjct: 310  RLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFD 369

Query: 1190 DAFSFFGDMKAQGHAPNRPVYTMLIKMCARGGRFVEAANYLMEMTELDLSPKSQCFDMIT 1369
            DAF FF DMK +GH PNRPVYTMLI MC RGGRFV+AANYL+EMTEL+L+P S+CFDM+T
Sbjct: 370  DAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVT 429

Query: 1370 DGLKNCGKHDLAKRIEQLEISLRG 1441
            DGLKNCGKHDLA++IEQLE+SLRG
Sbjct: 430  DGLKNCGKHDLARKIEQLEVSLRG 453


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  597 bits (1539), Expect = e-168
 Identities = 288/428 (67%), Positives = 358/428 (83%), Gaps = 4/428 (0%)
 Frame = +2

Query: 170  STNTINGQTSKDDYFAAIHHISNIVRRDFYMERTLQKMQITVTSELVYRVLRSCNKSGIE 349
            ST T N    +D YF+ IH+I+NI+R++ Y ERTL K+ + +TSELV+RVLR+C+ S  E
Sbjct: 1    STTTNN----RDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSE 56

Query: 350  SFRFFNWARNQPRYEPTTLEFEELIKTLGKNRNWETMWKVAEQMK-KLG--FNLTPDTFS 520
            S RFFNWAR+   Y PTT+E+EELI TL +N+ + +MWK+  Q+K  LG  F+++ DT  
Sbjct: 57   SLRFFNWARSY--YSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVC 114

Query: 521  LIIESYGKHGLVDKAVEVFNRM-KNFDCEQNTQVYNALLFALCEVKNFQGAYALIRRMIR 697
             IIE YGKHGL+D+AVEVFN+  ++ +C+ N  VYN+LLFALCEVK F GAYAL+RRMIR
Sbjct: 115  SIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIR 174

Query: 698  KGGVPDKRTYAVLVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLNAGYLES 877
            KG VPDKRTY VLVNGWCS+GKL+EA+ FLEEMS+KGFNPPVRGRDLLI+GLLNAGYLES
Sbjct: 175  KGIVPDKRTYGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLES 234

Query: 878  AKGLVRKMTKEGYLPDISTFNSLLEALCNAGEIDFCINLLRDVCKLGLFPDISTYKVMVP 1057
            AK +VR+M KEG +PD++TFNS++EA+CNAGE+DFC+++   VCKLG  PDI++YK+++P
Sbjct: 235  AKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIP 294

Query: 1058 AVSKLGRMDEAFRLLYCSIEDGQKPFPSLYAPILKGLCRVGQFDDAFSFFGDMKAQGHAP 1237
            AVSK+GR+DEAFRLL+  IEDG KPFPSLYAPI+KG+ R GQFDDAF FF +MK +GH P
Sbjct: 295  AVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPP 354

Query: 1238 NRPVYTMLIKMCARGGRFVEAANYLMEMTELDLSPKSQCFDMITDGLKNCGKHDLAKRIE 1417
            NRPVYTM+I MC RGG+ VEAANYL+EMTE+ L P S+CFDM+TDGLKNCGKHDLAKRIE
Sbjct: 355  NRPVYTMMITMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIE 414

Query: 1418 QLEISLRG 1441
            QLE+SLRG
Sbjct: 415  QLEVSLRG 422


>ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538836|gb|EEF40436.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 451

 Score =  594 bits (1531), Expect = e-167
 Identities = 287/446 (64%), Positives = 362/446 (81%), Gaps = 8/446 (1%)
 Frame = +2

Query: 122  FFLYHSLKTLTPEPHQ------STNTINGQTSKDDYFAAIHHISNIVRRDFYMERTLQKM 283
            F L  +  T+T +P +      ST+T N   +KD YFA IHHI+NIVRRDFY ERTL K+
Sbjct: 8    FILPKTTATVTLQPLRHLKVLASTSTNN---TKDAYFALIHHITNIVRRDFYPERTLNKL 64

Query: 284  QITVTSELVYRVLRSCNKSGIESFRFFNWARNQPRYEPTTLEFEELIKTLGKNRNWETMW 463
               VTSELV+RVLR+C++S  ES RFFNW+R    Y PT++E+EELIK L K++ + +MW
Sbjct: 65   NAPVTSELVFRVLRACSRSPTESLRFFNWSRAY--YTPTSIEYEELIKILAKSKRYSSMW 122

Query: 464  KVAEQMKKLG--FNLTPDTFSLIIESYGKHGLVDKAVEVFNRMKNFDCEQNTQVYNALLF 637
            K+  QMK     F+++ +T   IIE YG+ GL+D+AVEVFN+  + +CEQN  +YN+LLF
Sbjct: 123  KLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSLLF 182

Query: 638  ALCEVKNFQGAYALIRRMIRKGGVPDKRTYAVLVNGWCSAGKLKEAQDFLEEMSRKGFNP 817
            ALCEVK F GAYAL+RR+IRKG  P+K TY+VLVNGWCS GK KEAQ FLEEMS+KGFNP
Sbjct: 183  ALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNP 242

Query: 818  PVRGRDLLIDGLLNAGYLESAKGLVRKMTKEGYLPDISTFNSLLEALCNAGEIDFCINLL 997
            PVRGRDLLI+GLLNAGY ESAK +V KM+KEG++PD++TFN L+EA+CN+GE+DFC+++ 
Sbjct: 243  PVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMY 302

Query: 998  RDVCKLGLFPDISTYKVMVPAVSKLGRMDEAFRLLYCSIEDGQKPFPSLYAPILKGLCRV 1177
              + KLG  PDI++YK+++PAVSK+G++DEAF+LL  SIEDG KPFP LYAPI+KG+CR 
Sbjct: 303  YSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPGLYAPIIKGMCRR 362

Query: 1178 GQFDDAFSFFGDMKAQGHAPNRPVYTMLIKMCARGGRFVEAANYLMEMTELDLSPKSQCF 1357
            GQFDDAF FFG+MK +GH PNRPVYTMLI MC RGG++VEAANYL+EMTE+ L+P S+CF
Sbjct: 363  GQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEMTEMGLTPISRCF 422

Query: 1358 DMITDGLKNCGKHDLAKRIEQLEISL 1435
            DM+TDGLKNCGKHDLAKRIEQLE+S+
Sbjct: 423  DMVTDGLKNCGKHDLAKRIEQLEVSV 448


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317651|gb|EFH48073.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 459

 Score =  581 bits (1497), Expect = e-163
 Identities = 278/429 (64%), Positives = 347/429 (80%), Gaps = 1/429 (0%)
 Frame = +2

Query: 158  EPHQSTNTINGQTSKDDYFAAIHHISNIVRRDFYMERTLQKMQITVTSELVYRVLRSCNK 337
            EP QS+++     +K DYFAAI+H+ NIVRR+ + ER+L  +++ VTSE V+RVLR+ ++
Sbjct: 33   EPLQSSDST---PTKGDYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSR 89

Query: 338  SGIESFRFFNWARNQPRYEPTTLEFEELIKTLGKNRNWETMWKVAEQMKKLGFNLTPDTF 517
            S  +S RFFNWAR+ P Y PT++E+EEL K+L  ++ +E+MWK+ +QMK L  +++ +T 
Sbjct: 90   SANDSLRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETL 149

Query: 518  SLIIESYGKHGLVDKAVEVFNRM-KNFDCEQNTQVYNALLFALCEVKNFQGAYALIRRMI 694
              IIE YGK+G VD+AVE+FN + K   C+Q   VYNALL ALC+VK F GAYALIRRMI
Sbjct: 150  CFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMI 209

Query: 695  RKGGVPDKRTYAVLVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLNAGYLE 874
            RKG  PDKRTYA+LVNGWCSAGK+KEAQ+FL+EMSRKGFNPP RGRDLLI+GLLNAGYLE
Sbjct: 210  RKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLE 269

Query: 875  SAKGLVRKMTKEGYLPDISTFNSLLEALCNAGEIDFCINLLRDVCKLGLFPDISTYKVMV 1054
            SAK +V KMTK G++PDI TFN+L+EA+  +GE++FCI +    CKLGL  DI TYK ++
Sbjct: 270  SAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLI 329

Query: 1055 PAVSKLGRMDEAFRLLYCSIEDGQKPFPSLYAPILKGLCRVGQFDDAFSFFGDMKAQGHA 1234
            PAVSK+G++DEAFRLL   +EDG KPFPSLYAPI+KG+CR G FDDAFSFF DMK + H 
Sbjct: 330  PAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHP 389

Query: 1235 PNRPVYTMLIKMCARGGRFVEAANYLMEMTELDLSPKSQCFDMITDGLKNCGKHDLAKRI 1414
            PNRPVYTMLI MC RGG+FV+AANYL+EMTE+ L P S+CFDM+TDGLKN GKHDLA RI
Sbjct: 390  PNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAMRI 449

Query: 1415 EQLEISLRG 1441
            EQLE+ LRG
Sbjct: 450  EQLEVQLRG 458