BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030338
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ...   324   1e-86
ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [...   281   1e-73
ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p...   280   2e-73
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2...   280   3e-73
ref|XP_004160105.1| PREDICTED: DNA polymerase epsilon catalytic ...   267   1e-69

>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
            vinifera]
          Length = 2214

 Score =  324 bits (830), Expect = 1e-86
 Identities = 163/265 (61%), Positives = 198/265 (74%), Gaps = 20/265 (7%)
 Frame = -2

Query: 736  QRLGSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKDDKFRQRKLVDMFSPLKKVD 557
            QRLGSAIQKIITIPAAMQKVANPVPRV+HPDWL+KKVREK++KFRQRKLVDMF  LK+ D
Sbjct: 1104 QRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLYKKVREKEEKFRQRKLVDMFGSLKRDD 1163

Query: 556  G-------------------GDLEDFRNKGSASSIGPRPIVRSYEVNKERHSDKASCPTL 434
                                 DLEDFRNKG  SS GPRPIVR YEVN ++ SD  +C  L
Sbjct: 1164 NVKMNVDAITSNHVISEENIEDLEDFRNKGRTSSAGPRPIVRCYEVNGKQQSDAMNC--L 1221

Query: 433  SSQPQINAT-SGQLLTPLHKNAVTEENLDRNVDYQGWLKLKKRKWKNTLEVRKKRRLGNS 257
            ++ PQ  A  S   LTP+    ++ +N+DRNVDYQGWL++KKRKWK+  E RK++R+ NS
Sbjct: 1222 ANSPQEPANHSESALTPMQPTDISTDNIDRNVDYQGWLEMKKRKWKDAREKRKRQRMDNS 1281

Query: 256  TKFHQSDGVGDMSGGVTSHKQVNGRNGVSSFFRRHELSLVRSHWQIIQLVPSPQVGHFFA 77
               +Q++GV ++ GGV +HKQ  GR GV+S+FRRHEL+L  S+WQIIQL PS Q G FFA
Sbjct: 1282 KTSNQTNGVSELPGGVINHKQAQGRTGVNSYFRRHELALTHSYWQIIQLAPSSQHGQFFA 1341

Query: 76   WVVVDGIMLKVPIHVPRVFYLNSKA 2
            WV+V+G+MLK+PI VPRVFYLNSKA
Sbjct: 1342 WVIVEGVMLKIPITVPRVFYLNSKA 1366


>ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [Medicago truncatula]
            gi|355507282|gb|AES88424.1| DNA polymerase epsilon
            catalytic subunit A [Medicago truncatula]
          Length = 2248

 Score =  281 bits (719), Expect = 1e-73
 Identities = 149/267 (55%), Positives = 187/267 (70%), Gaps = 22/267 (8%)
 Frame = -2

Query: 736  QRLGSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKDDKFRQRKLVDMFSPLKK-- 563
            QRL S+IQKIITIPAAMQKVANPVPRV+HPDWLHKKVREK+DKFRQRK+ D F  + K  
Sbjct: 1118 QRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMNKNE 1177

Query: 562  ---------------VDG--GDLEDFRNKGSASSIGPRPIVRSYEVNKERHSDKASCPTL 434
                           VD    D+EDF NKG +S++GPRPI+R YE N E+HS+K +    
Sbjct: 1178 HSKKHNDSSGVNLVMVDDTVNDMEDFGNKGRSSTLGPRPIIRHYEANNEQHSEKFNGQED 1237

Query: 433  SSQPQINATSGQLLTPLHKNAVTEENLDRNVDYQGWLKLKKRKWKNTLEVRKKRRLG-NS 257
            S Q  I++++        +N  + EN+DR VDYQGWL+LKKRKWK+ L  RKK+R+  + 
Sbjct: 1238 SEQQHIDSSNID-----QQNETSCENVDRTVDYQGWLQLKKRKWKSMLGKRKKQRMSFDF 1292

Query: 256  TKFHQSDGVGDMSGGV--TSHKQVNGRNGVSSFFRRHELSLVRSHWQIIQLVPSPQVGHF 83
             +   S     ++G +  T+ K  +GR+ VSS+FRRHE+ L R HWQIIQLV SPQVG F
Sbjct: 1293 LRLENSKKSDHLNGSLEQTNSKMNHGRSNVSSYFRRHEVVLTRGHWQIIQLVHSPQVGQF 1352

Query: 82   FAWVVVDGIMLKVPIHVPRVFYLNSKA 2
            FAWVVVDGIMLK+PI +PRVFYLNS++
Sbjct: 1353 FAWVVVDGIMLKIPISIPRVFYLNSRS 1379


>ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus
            communis] gi|223531477|gb|EEF33309.1| DNA polymerase
            epsilon, catalytic subunit, putative [Ricinus communis]
          Length = 2227

 Score =  280 bits (716), Expect = 2e-73
 Identities = 153/266 (57%), Positives = 179/266 (67%), Gaps = 21/266 (7%)
 Frame = -2

Query: 736  QRLGSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKDDKFRQRKLVDMFSPLKKVD 557
            QRL SAIQKIITIPAAMQKVANPVPRV+HPDWLHKKVREK+DKFRQRKLVD+F    K D
Sbjct: 1106 QRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDIFRLSSKED 1165

Query: 556  G-------------------GDLEDFRNKGSASSIGPRPIVRSYEVNKERHSDKASCPTL 434
                                 DLEDFRNK S S+ GPRPIV  Y  N E HS KA+    
Sbjct: 1166 FVRKNNDTITDNCMMDEENVEDLEDFRNK-SISTNGPRPIVHCYATNSEEHSVKATGRMD 1224

Query: 433  SSQPQINATSG--QLLTPLHKNAVTEENLDRNVDYQGWLKLKKRKWKNTLEVRKKRRLGN 260
            SS  Q +      +L + + + A + E++DRNVDYQGWL+LKKRKWK+TLE RK++RLGN
Sbjct: 1225 SSHQQTDNGESVHELSSLVQQTASSGESIDRNVDYQGWLELKKRKWKDTLERRKRQRLGN 1284

Query: 259  STKFHQSDGVGDMSGGVTSHKQVNGRNGVSSFFRRHELSLVRSHWQIIQLVPSPQVGHFF 80
                  ++G  +    V + K+   R GV S+F  HE++L R HWQIIQL P    G FF
Sbjct: 1285 LRNSSHANGDFEPLSSVINRKKAQSRTGVGSYFTTHEIALTRCHWQIIQLFPGSHCGEFF 1344

Query: 79   AWVVVDGIMLKVPIHVPRVFYLNSKA 2
            AWVVV+GIMLKVPI VPRVFYLNSKA
Sbjct: 1345 AWVVVEGIMLKVPITVPRVFYLNSKA 1370


>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
            predicted protein [Populus trichocarpa]
          Length = 2221

 Score =  280 bits (715), Expect = 3e-73
 Identities = 146/262 (55%), Positives = 184/262 (70%), Gaps = 17/262 (6%)
 Frame = -2

Query: 736  QRLGSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKDDKFRQRKLVDMFSPL---- 569
            QRLGSAIQKI+TIPAAMQKVANPVPRV+HPDWLH+KVREK+DKFRQRKLVD+F+      
Sbjct: 1105 QRLGSAIQKIVTIPAAMQKVANPVPRVVHPDWLHRKVREKEDKFRQRKLVDIFNLRSRDD 1164

Query: 568  --KKVDGG-----------DLEDFRNKGSASSIGPRPIVRSYEVNKERHSDKASCPTLSS 428
              +K+D             DLEDF+ K S+ +  PRPIVR Y+VN++R + K     L+S
Sbjct: 1165 LSRKMDDATITNHDEANVKDLEDFQIKSSSIN-RPRPIVRCYDVNEKRSAKKTG--QLNS 1221

Query: 427  QPQINATSGQLLTPLHKNAVTEENLDRNVDYQGWLKLKKRKWKNTLEVRKKRRLGNSTKF 248
              Q   +  +L +    N    EN+DRNVDYQGWL+LKKRKWK+ L+ RKK+RL N+   
Sbjct: 1222 AEQQTDSVHELSSQPQHNTSYAENIDRNVDYQGWLELKKRKWKDILDRRKKQRLNNTRTS 1281

Query: 247  HQSDGVGDMSGGVTSHKQVNGRNGVSSFFRRHELSLVRSHWQIIQLVPSPQVGHFFAWVV 68
            H      ++ GG+T+HK    R GV S+F  HE++L R HWQIIQL+PS + G FFAWVV
Sbjct: 1282 HHITDASELLGGLTNHKGAQRRTGVGSYFTTHEVALTRCHWQIIQLLPSSRCGQFFAWVV 1341

Query: 67   VDGIMLKVPIHVPRVFYLNSKA 2
            V+GIMLK+PI +PR FYLN+KA
Sbjct: 1342 VEGIMLKIPITIPRAFYLNAKA 1363


>ref|XP_004160105.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like, partial
            [Cucumis sativus]
          Length = 2051

 Score =  267 bits (683), Expect = 1e-69
 Identities = 144/264 (54%), Positives = 182/264 (68%), Gaps = 19/264 (7%)
 Frame = -2

Query: 736  QRLGSAIQKIITIPAAMQKVANPVPRVIHPDWLHKKVREKDDKFRQRKLVDMFSPLKKV- 560
            QRL SAIQKIITIPAAMQKVANPVPRV+HPDWLHKKVREKDDKFRQ+K+ DMF+   +V 
Sbjct: 1104 QRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSSRVK 1163

Query: 559  ------------------DGGDLEDFRNKGSASSIGPRPIVRSYEVNKERHSDKASCPTL 434
                              +  DLEDF+ K S+++ GP+P+VR Y+V  ++HS  +   T 
Sbjct: 1164 YSKKNSDVSCTKHAVDEDNSEDLEDFQKKTSSTN-GPKPVVRCYDVKGKKHSLTSDIET- 1221

Query: 433  SSQPQINATSGQLLTPLHKNAVTEENLDRNVDYQGWLKLKKRKWKNTLEVRKKRRLGNST 254
            +S+ Q N   G        + V  EN+D+NVDY GWL+LKKRKWK+TL+ RKK+RL NS 
Sbjct: 1222 NSEMQENLNDGGFEP---SSPVDVENIDKNVDYSGWLELKKRKWKDTLDRRKKQRLVNSR 1278

Query: 253  KFHQSDGVGDMSGGVTSHKQVNGRNGVSSFFRRHELSLVRSHWQIIQLVPSPQVGHFFAW 74
                ++ V     G T++K    R GV S+F+RHE S+ R HWQI+QLV SPQ G +FAW
Sbjct: 1279 TPLAANNVTRELNGATNNKDA-PRTGVGSYFKRHEGSVTRCHWQILQLVQSPQSGQYFAW 1337

Query: 73   VVVDGIMLKVPIHVPRVFYLNSKA 2
             VV+G+MLK+PI+VPRVFYLNSKA
Sbjct: 1338 AVVEGVMLKIPINVPRVFYLNSKA 1361