BLASTX nr result

ID: Cimicifuga21_contig00030237 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030237
         (251 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75064.1| hypothetical protein VITISV_025472 [Vitis vinifera]    71   1e-10
emb|CBI25119.3| unnamed protein product [Vitis vinifera]               69   3e-10
ref|XP_002300289.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09
ref|XP_002522091.1| conserved hypothetical protein [Ricinus comm...    64   1e-08
ref|XP_002892917.1| hypothetical protein ARALYDRAFT_471862 [Arab...    58   9e-07

>emb|CAN75064.1| hypothetical protein VITISV_025472 [Vitis vinifera]
          Length = 1013

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 6/80 (7%)
 Frame = +1

Query: 1   KDQK----RVKEGSLSKGSKSFMAPTISAISKISQPSPRKKVLSERNETVRSSISE-SDG 165
           KDQ     R++  ++SKG+K+FM+PTISA SKI+  SP+KKVL ERNE +R+S+S  SDG
Sbjct: 87  KDQNAKPVRIRSPAVSKGTKNFMSPTISAASKIA-ASPKKKVLLERNELIRTSLSSFSDG 145

Query: 166 KSLLDE-DLSEITEDVGSKS 222
           KS L   +L E+ ED  SKS
Sbjct: 146 KSPLSPLNLQEVVEDSDSKS 165


>emb|CBI25119.3| unnamed protein product [Vitis vinifera]
          Length = 173

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 43/79 (54%), Positives = 57/79 (72%), Gaps = 6/79 (7%)
 Frame = +1

Query: 1   KDQK----RVKEGSLSKGSKSFMAPTISAISKISQPSPRKKVLSERNETVRSSISE-SDG 165
           KDQ     R++  ++SKG+K+FM+PTISA SKI+  SP+KKVL ERNE +R+S+S  SDG
Sbjct: 87  KDQNAKPVRIRSPAVSKGTKNFMSPTISAASKIA-ASPKKKVLLERNELIRTSLSSFSDG 145

Query: 166 KSLLDE-DLSEITEDVGSK 219
           KS L   +L E+ ED  SK
Sbjct: 146 KSPLSPLNLQEVVEDSDSK 164


>ref|XP_002300289.1| predicted protein [Populus trichocarpa] gi|222847547|gb|EEE85094.1|
           predicted protein [Populus trichocarpa]
          Length = 867

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
 Frame = +1

Query: 1   KDQ--KRVKEGSLSKGSKSFMAPTISAISKISQPSPRKKVLSERNETVRSSISESDGKSL 174
           KDQ  K V+  S +KG+K+FM+PTISA SKI+  SPRKK+L++ NE +R+SIS SD KS 
Sbjct: 91  KDQNWKSVRIRSPAKGAKNFMSPTISAASKINA-SPRKKILADWNEQIRTSISFSDTKSP 149

Query: 175 LDEDL-SEITEDVGSKSEMGIGSQV 246
           L EDL S+  + +  K E+   S V
Sbjct: 150 LMEDLYSKPNKGLNQKKEVSFDSTV 174


>ref|XP_002522091.1| conserved hypothetical protein [Ricinus communis]
           gi|223538690|gb|EEF40291.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 868

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 39/79 (49%), Positives = 50/79 (63%)
 Frame = +1

Query: 7   QKRVKEGSLSKGSKSFMAPTISAISKISQPSPRKKVLSERNETVRSSISESDGKSLLDED 186
           Q +V+  + SKG+K+FM+PTISA SKI   SPRKK+L+ERNE +RSS S SD K    E 
Sbjct: 96  QAKVQSPASSKGAKNFMSPTISAASKI-HASPRKKILTERNEQIRSSGSYSDSKGPTKEV 154

Query: 187 LSEITEDVGSKSEMGIGSQ 243
           L       G K E G+  +
Sbjct: 155 L-------GKKPEKGLNQK 166


>ref|XP_002892917.1| hypothetical protein ARALYDRAFT_471862 [Arabidopsis lyrata subsp.
           lyrata] gi|297338759|gb|EFH69176.1| hypothetical protein
           ARALYDRAFT_471862 [Arabidopsis lyrata subsp. lyrata]
          Length = 823

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
 Frame = +1

Query: 34  SKGSKSFMAPTISAISKISQPSPRKKVLSERNET------------VRSSISESDGKSLL 177
           +KGSK FM+PTISA+SKI+ PSPRKK+LS++NE             V+SS+S SD  S++
Sbjct: 91  TKGSKHFMSPTISAVSKIN-PSPRKKILSDKNEVSRSFDKTHHQVQVKSSVSFSDVISII 149

Query: 178 DEDLSEITEDVGSKSEM 228
            ED       +  K ++
Sbjct: 150 GEDKDHEQTYIDEKKQL 166


Top