BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030228
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containi...   155   2e-36
ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat...    95   5e-18
ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...    92   4e-17
ref|XP_002526706.1| pentatricopeptide repeat-containing protein,...    92   4e-17

>ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 634

 Score =  155 bits (393), Expect = 2e-36
 Identities = 73/135 (54%), Positives = 99/135 (73%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           + PND TFSFLFK  FR+ D + V+QIH H+ K+GF     VCNGL++VYAKG   L SA
Sbjct: 126 LSPNDLTFSFLFKPCFRTKDVRYVEQIHAHIQKIGFLSDPFVCNGLVSVYAKGFNSLVSA 185

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
           +++FDE+P++ LV CWT L+ G+A  G S+E L LF  M ++N+ P+ DTMVS+LSACS+
Sbjct: 186 RKVFDEIPDKMLVSCWTNLITGFAQSGHSEEVLQLFQVMVRQNLLPQSDTMVSVLSACSS 245

Query: 50  LEIQEIERWEKVFAE 6
           LE+ +IE+W  VF E
Sbjct: 246 LEMPKIEKWVNVFLE 260


>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/135 (38%), Positives = 80/135 (59%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           I PN FT+ F+ KA          + +H  VVK GFDC   V N ++ +Y+     + SA
Sbjct: 128 ILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSA 187

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
           +++FDEMP+   V  W+ ++ GYA VG+S EA+ LF  M    + P++ TMVS+LSAC++
Sbjct: 188 RKVFDEMPKSDSV-TWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTD 246

Query: 50  LEIQEIERWEKVFAE 6
           L   E+ +W + + E
Sbjct: 247 LGALELGKWIEAYIE 261



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/133 (28%), Positives = 66/133 (49%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           +CP++ T   +  A       +  K I  ++ +        V N L+ ++AK   D+  A
Sbjct: 230 VCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAK-CGDISKA 288

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
            +LF  M E+ +V  WT ++ G A+ G+ +EA  LF  M    + P+D   + +LSACS+
Sbjct: 289 LKLFRAMNEKTIV-SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSH 347

Query: 50  LEIQEIERWEKVF 12
             +  +ER  + F
Sbjct: 348 SGL--VERGREYF 358


>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 51/119 (42%), Positives = 78/119 (65%)
 Frame = -1

Query: 404 PNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSAQR 225
           PN+FTF F+ KA  R  D Q   +IHT VVK GFDC   V   L+ +YAK    L+ A +
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAK-CGYLEDAHK 168

Query: 224 LFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSNL 48
           +FD++P++ +V  WT +++GY  VG+ +EA+ +F R+ + N+ P+  T+V +LSAC+ L
Sbjct: 169 VFDDIPDKNVV-SWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQL 226



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 45/129 (34%), Positives = 77/129 (59%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           + P+ FT   +  A  +  D  + + IH  ++++G   +  V   L+ +YAK   +++ A
Sbjct: 209 LAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAK-CGNMEKA 267

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
           + +FD MPE+ +V  W  ++ GYAL G  KEA+ LF++M +EN+KP+  T+V +LSAC+ 
Sbjct: 268 RSVFDGMPEKDIV-SWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACAR 326

Query: 50  LEIQEIERW 24
           L   E+  W
Sbjct: 327 LGALELGEW 335


>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 52/135 (38%), Positives = 78/135 (57%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           I PN + F F+ KA     D    K +H  +VK GFD    V N ++ +Y      ++ A
Sbjct: 105 ISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFA 164

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
           ++LFDEMP+   V  WT ++ GYA +GQS  A+ LF +M    + P+D TMVS+LSAC++
Sbjct: 165 RKLFDEMPKLDPV-TWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTD 223

Query: 50  LEIQEIERWEKVFAE 6
           L   E+ +W + + E
Sbjct: 224 LGALELGKWIESYIE 238



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 41/135 (30%), Positives = 69/135 (51%)
 Frame = -1

Query: 410 ICPNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSA 231
           +CP+D T   +  A       +  K I +++ K        + N L+ ++AK   D+  A
Sbjct: 207 VCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAK-CGDVDKA 265

Query: 230 QRLFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSN 51
             LF  M +R +V  WT ++ G A+ G+  EA++LF  M    + PED   + +LSACS+
Sbjct: 266 LGLFRNMSKRTIV-SWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSH 324

Query: 50  LEIQEIERWEKVFAE 6
             +  +ER  + F+E
Sbjct: 325 SGL--VERGRQYFSE 337


>ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534006|gb|EEF35728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 461

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 50/116 (43%), Positives = 74/116 (63%)
 Frame = -1

Query: 404 PNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSAQR 225
           PN+FTF F+ KA  R  D Q    +HT VVKLGFDC+  V   L+++YAK    +  A +
Sbjct: 112 PNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAK-CGSIDDALK 170

Query: 224 LFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSAC 57
           + D +PE  +V  WT +++GY  VG+ +EA+ LF RM +  ++P+  T+V +LSAC
Sbjct: 171 MLDLIPESNIV-SWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSAC 225



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 41/127 (32%), Positives = 65/127 (51%)
 Frame = -1

Query: 404 PNDFTFSFLFKAFFRSNDPQNVKQIHTHVVKLGFDCHSVVCNGLLAVYAKGVKDLQSAQR 225
           P+ FT   +  A  +  D  N + I  ++ +     +  V   L+ +YAK   +++ A+ 
Sbjct: 213 PDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKH-GNMEKARC 271

Query: 224 LFDEMPERGLVFCWTCLMAGYALVGQSKEALTLFVRMAKENIKPEDDTMVSILSACSNLE 45
           LFD M ER +V  W+ ++ GYA  G  K+AL LF +M    +KP+   MV  L AC+ L 
Sbjct: 272 LFDGMAERDIV-SWSAMIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACARLG 330

Query: 44  IQEIERW 24
             E+  W
Sbjct: 331 ALELGDW 337