BLASTX nr result

ID: Cimicifuga21_contig00030195 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030195
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307311.1| AP2 domain-containing transcription factor [...   115   5e-24
ref|XP_002302387.1| AP2 domain-containing transcription factor [...   113   2e-23
ref|XP_002263597.2| PREDICTED: AP2-like ethylene-responsive tran...   112   2e-23
emb|CAN71938.1| hypothetical protein VITISV_038909 [Vitis vinifera]   112   2e-23
ref|XP_002285467.2| PREDICTED: AP2-like ethylene-responsive tran...   108   3e-22

>ref|XP_002307311.1| AP2 domain-containing transcription factor [Populus trichocarpa]
           gi|222856760|gb|EEE94307.1| AP2 domain-containing
           transcription factor [Populus trichocarpa]
          Length = 639

 Score =  115 bits (287), Expect = 5e-24
 Identities = 62/93 (66%), Positives = 71/93 (76%), Gaps = 3/93 (3%)
 Frame = +3

Query: 6   HTTNSDQQVVDESATLG-VHLSNASSIVTSVNSSREGSPDKNGLSMLFARPTSASKFINP 182
           H+ NS Q VVDESA LG  HLSN SS+VTS++SSRE SPDK G  +LFA+P  ASKFI P
Sbjct: 547 HSVNSSQPVVDESAKLGGTHLSNPSSLVTSLSSSREASPDKTGTPVLFAKPPRASKFIGP 606

Query: 183 ATSMNSWI-PAAQLRPAG-SMQHMPMFAAWADT 275
            TS+  WI  AAQLRPAG SM H+P+FAAW DT
Sbjct: 607 TTSVTPWIQAAAQLRPAGISMAHLPVFAAWNDT 639


>ref|XP_002302387.1| AP2 domain-containing transcription factor [Populus trichocarpa]
           gi|222844113|gb|EEE81660.1| AP2 domain-containing
           transcription factor [Populus trichocarpa]
          Length = 637

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/91 (62%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = +3

Query: 6   HTTNSDQQVVDESATLGVHLSNASSIVTSVNSSREGSPDKNGLSMLFARPTSASKFINPA 185
           H+ NS Q VVDESA LG  LSN SS+VTS++SSRE SPDK   +MLFA+P  ASKF++P 
Sbjct: 547 HSVNSSQLVVDESAKLGTLLSNPSSLVTSLSSSREPSPDKTATTMLFAKPPLASKFVSPT 606

Query: 186 TSMNSWIPAAQLRPAG-SMQHMPMFAAWADT 275
           TS+  W  AAQLRPA   M H+P+FAAW DT
Sbjct: 607 TSVTPWFQAAQLRPAAIPMSHLPVFAAWNDT 637


>ref|XP_002263597.2| PREDICTED: AP2-like ethylene-responsive transcription factor
           ANT-like [Vitis vinifera]
          Length = 653

 Score =  112 bits (281), Expect = 2e-23
 Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +3

Query: 24  QQVVDESATLGVHLSNASSIVTSVNSSREGSPDKNGLSMLFARPTSASKFI-NPATSMNS 200
           QQ  ++SA +G HLSNASS+VTS++SSREGSPDK  L MLFA P SA KF   PA ++NS
Sbjct: 569 QQEAEDSAKMGTHLSNASSLVTSLSSSREGSPDKTSLPMLFAIPPSAPKFFATPANTVNS 628

Query: 201 WIPAAQLRPAGSMQHMPMFAAWAD 272
           WIP+AQLRPA  M HMP+FAAW D
Sbjct: 629 WIPSAQLRPAIPMPHMPVFAAWTD 652


>emb|CAN71938.1| hypothetical protein VITISV_038909 [Vitis vinifera]
          Length = 908

 Score =  112 bits (281), Expect = 2e-23
 Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
 Frame = +3

Query: 24   QQVVDESATLGVHLSNASSIVTSVNSSREGSPDKNGLSMLFARPTSASKFI-NPATSMNS 200
            QQ  ++SA +G HLSNASS+VTS++SSREGSPDK  L MLFA P SA KF   PA ++NS
Sbjct: 824  QQEAEDSAKMGTHLSNASSLVTSLSSSREGSPDKTSLPMLFAIPPSAPKFFATPANTVNS 883

Query: 201  WIPAAQLRPAGSMQHMPMFAAWAD 272
            WIP+AQLRPA  M HMP+FAAW D
Sbjct: 884  WIPSAQLRPAIPMPHMPVFAAWTD 907


>ref|XP_002285467.2| PREDICTED: AP2-like ethylene-responsive transcription factor
           ANT-like [Vitis vinifera]
          Length = 674

 Score =  108 bits (271), Expect = 3e-22
 Identities = 52/92 (56%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 3   LHTTNSDQQVVDESATLGVHLSNASSIVTSVNSSREGSPDKNGLSMLFARPTSASKFINP 182
           + + N+ Q + DES  LG H SN SS+VTS++SSRE SPDK G +MLFA+P  ASK + P
Sbjct: 583 IDSVNTSQPIGDESTKLGTHFSNPSSLVTSLSSSREASPDKTGPAMLFAKPPLASKLMGP 642

Query: 183 ATSMNSWIPAAQLRPAG-SMQHMPMFAAWADT 275
           A++++SWIP +QLR A  SM H+P+FAAW DT
Sbjct: 643 ASALSSWIPTSQLRTAAVSMAHLPLFAAWNDT 674


Top