BLASTX nr result

ID: Cimicifuga21_contig00030141 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030141
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281044.2| PREDICTED: uncharacterized protein LOC100261...    52   1e-09
emb|CBI20823.3| unnamed protein product [Vitis vinifera]               52   1e-09
emb|CAN64247.1| hypothetical protein VITISV_039945 [Vitis vinifera]    52   1e-09
ref|XP_002330559.1| predicted protein [Populus trichocarpa] gi|2...    44   2e-06

>ref|XP_002281044.2| PREDICTED: uncharacterized protein LOC100261159 [Vitis vinifera]
          Length = 1460

 Score = 52.4 bits (124), Expect(2) = 1e-09
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -1

Query: 210  LTHTSYKFLWMHISDSYLMLKMYHVFASLCGSEYVNLSIHS*IMTVTRSIVTLLE 46
            +   SY    MH SDS L+L + HVFA +CG +Y  LS +  IMTV +S+VT+ E
Sbjct: 1110 ICEASYDIFRMHRSDSSLLLTILHVFAHVCGKKYFTLSNYCLIMTVMKSLVTISE 1164



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 344  EQYFRCDSQXXXXXXXXXXXXXSETVTADKLVAGSFILASICATT*HI 201
            E +  CDS+              ET +  +LVAGS ILASIC    HI
Sbjct: 1060 ESFVVCDSRFSILVDGVDRIMSFETASTHQLVAGSIILASICTAIDHI 1107


>emb|CBI20823.3| unnamed protein product [Vitis vinifera]
          Length = 884

 Score = 52.4 bits (124), Expect(2) = 1e-09
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -1

Query: 210 LTHTSYKFLWMHISDSYLMLKMYHVFASLCGSEYVNLSIHS*IMTVTRSIVTLLE 46
           +   SY    MH SDS L+L + HVFA +CG +Y  LS +  IMTV +S+VT+ E
Sbjct: 534 ICEASYDIFRMHRSDSSLLLTILHVFAHVCGKKYFTLSNYCLIMTVMKSLVTISE 588



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 344 EQYFRCDSQXXXXXXXXXXXXXSETVTADKLVAGSFILASICATT*HI 201
           E +  CDS+              ET +  +LVAGS ILASIC    HI
Sbjct: 484 ESFVVCDSRFSILVDGVDRIMSFETASTHQLVAGSIILASICTAIDHI 531


>emb|CAN64247.1| hypothetical protein VITISV_039945 [Vitis vinifera]
          Length = 441

 Score = 52.4 bits (124), Expect(2) = 1e-09
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = -1

Query: 210 LTHTSYKFLWMHISDSYLMLKMYHVFASLCGSEYVNLSIHS*IMTVTRSIVTLLE 46
           +   SY    MH SDS L+L + HVFA +CG +Y  LS +  IMTV +S+VT+ E
Sbjct: 91  ICEASYDIFRMHRSDSSLLLTILHVFAHVCGKKYFTLSNYCLIMTVMKSLVTISE 145



 Score = 35.0 bits (79), Expect(2) = 1e-09
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 344 EQYFRCDSQXXXXXXXXXXXXXSETVTADKLVAGSFILASICATT*HI 201
           E +  CDS+              ET +  +LVAGS ILASIC    HI
Sbjct: 41  ESFVVCDSRFSILVDGVDRIMSFETASTHQLVAGSIILASICTAIDHI 88


>ref|XP_002330559.1| predicted protein [Populus trichocarpa] gi|222872117|gb|EEF09248.1|
            predicted protein [Populus trichocarpa]
          Length = 1681

 Score = 44.3 bits (103), Expect(2) = 2e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = -1

Query: 210  LTHTSYKFLWMHISDSYLMLKMYHVFASLCGSEYVNLSIHS*IMTVTRSIVTLLE 46
            L   SY  L MH  D+  +L + H+F+ L G ++ +L  H+  MTV +SI+  LE
Sbjct: 1355 LCQASYSLLLMHKCDTVFVLTILHIFSYLAGEKFFSLREHNLTMTVLKSIIMFLE 1409



 Score = 32.0 bits (71), Expect(2) = 2e-06
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 329  CDSQXXXXXXXXXXXXXSETVTADKLVAGSFILASICA 216
            CDS              S++ +AD LVAGS ILASICA
Sbjct: 1310 CDSMIDILLDGVNIKFASKSASADLLVAGSIILASICA 1347


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