BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030078
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD63094.1| photosystem II protein M [Microlaena stipoides]         89   3e-16
gb|AAS46110.1| photosystem II M protein [Oryza sativa Japonica G...    89   3e-16
gb|ADD63027.1| photosystem II protein M [Potamophila parviflora]       89   4e-16
ref|XP_002888353.1| hypothetical protein ARALYDRAFT_893970 [Arab...    70   1e-10
ref|YP_654205.1| photosystem II M protein [Oryza sativa Indica G...    70   1e-10

>gb|ADD63094.1| photosystem II protein M [Microlaena stipoides]
          Length = 69

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 49/69 (71%), Positives = 52/69 (75%)
 Frame = +3

Query: 135 IQYHQDVFLPLNL*EKDLESLWD*IPSYYEVKDEIMEVNILAFIATALFILVPTAFLLII 314
           IQY+Q+   P         S WD IPSYYE K E+MEVNILAFIATALFILVPTAFLLII
Sbjct: 2   IQYYQNASPPPEFTVSPFPSPWDYIPSYYE-KKEVMEVNILAFIATALFILVPTAFLLII 60

Query: 315 YVKTVSQND 341
           YVKT SQND
Sbjct: 61  YVKTASQND 69


>gb|AAS46110.1| photosystem II M protein [Oryza sativa Japonica Group]
           gi|42795608|gb|AAS46173.1| photosystem II M protein
           [Oryza sativa Japonica Group]
           gi|290790563|gb|ADD62823.1| photosystem II protein M
           [Oryza sativa Japonica Group]
           gi|290790632|gb|ADD62891.1| photosystem II protein M
           [Oryza meridionalis] gi|290790701|gb|ADD62959.1|
           photosystem II protein M [Oryza australiensis]
          Length = 69

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 50/69 (72%), Positives = 53/69 (76%)
 Frame = +3

Query: 135 IQYHQDVFLPLNL*EKDLESLWD*IPSYYEVKDEIMEVNILAFIATALFILVPTAFLLII 314
           IQY+Q+   PL        S WD IPSY E K E+MEVNILAFIATALFILVPTAFLLII
Sbjct: 2   IQYYQNASPPLEFTGYPFPSPWDYIPSYCE-KKEVMEVNILAFIATALFILVPTAFLLII 60

Query: 315 YVKTVSQND 341
           YVKTVSQND
Sbjct: 61  YVKTVSQND 69


>gb|ADD63027.1| photosystem II protein M [Potamophila parviflora]
          Length = 69

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 50/69 (72%), Positives = 53/69 (76%)
 Frame = +3

Query: 135 IQYHQDVFLPLNL*EKDLESLWD*IPSYYEVKDEIMEVNILAFIATALFILVPTAFLLII 314
           IQY+Q+   PL        S WD IPSY E K E+MEVNILAFIATALFILVPTAFLLII
Sbjct: 2   IQYYQNASPPLEFTGYPFYSPWDYIPSYCE-KKEVMEVNILAFIATALFILVPTAFLLII 60

Query: 315 YVKTVSQND 341
           YVKTVSQND
Sbjct: 61  YVKTVSQND 69


>ref|XP_002888353.1| hypothetical protein ARALYDRAFT_893970 [Arabidopsis lyrata subsp.
           lyrata] gi|297334194|gb|EFH64612.1| hypothetical protein
           ARALYDRAFT_893970 [Arabidopsis lyrata subsp. lyrata]
          Length = 120

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 36/55 (65%), Positives = 43/55 (78%), Gaps = 5/55 (9%)
 Frame = -2

Query: 347 KLIILTDRFYVNDK*KSSRD*NEQCSSNKCENIDFHNFI-----FYFIITRDLIP 198
           KLIILT+ FYVN K KSSR+ NE+C SNKC+NI FHN I     F+F+I+RDLIP
Sbjct: 66  KLIILTNGFYVNYKQKSSRNENEECGSNKCKNIYFHNLIVYYYYFFFLISRDLIP 120


>ref|YP_654205.1| photosystem II M protein [Oryza sativa Indica Group]
           gi|42795478|gb|AAS46045.1| photosystem II M protein
           [Oryza sativa Indica Group]
          Length = 68

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 35/60 (58%), Positives = 37/60 (61%)
 Frame = +2

Query: 158 PPIEFIGKRFRISMGLDPELL*SKR*NYGSQYSRIYCYCTVHSSPYCFFTYHLRKNGQSK 337
           PP+EF G  F       P     KR  YGSQYSRIYCYC VHSS YC FTY+L KN Q K
Sbjct: 10  PPLEFTGYPFPSPWDYIPSYCEKKR-GYGSQYSRIYCYCIVHSSSYCLFTYYLCKNSQPK 68