BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030056
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat...   177   1e-42
ref|XP_002533336.1| pentatricopeptide repeat-containing protein,...   166   2e-39
ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   165   3e-39
ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat...   165   3e-39
ref|XP_002310370.1| predicted protein [Populus trichocarpa] gi|2...   160   1e-37

>ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  177 bits (448), Expect = 1e-42
 Identities = 92/118 (77%), Positives = 98/118 (83%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LIAMYLK ++K M +AL  F S+E KD VSWNSILTGFSQ+GLSEDAL FF  MRS    
Sbjct: 344 LIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVV 403

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           IDHYAFSAVLRSCSDLAT QLGQQVH L LKSG E NGFVASSLIFMYSKCGVIEDA+
Sbjct: 404 IDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDAR 461



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 40/102 (39%), Positives = 62/102 (60%)
 Frame = -2

Query: 312 ALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSCSD 133
           A K F     +D+VSWN+++ GF   G  E AL F   M+   F +D Y+F ++L+  + 
Sbjct: 53  ASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVAC 112

Query: 132 LATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
           +   ++GQQVH++ +K G E N F  S+L+ MY+KC  +EDA
Sbjct: 113 VGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDA 154



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 40/118 (33%), Positives = 64/118 (54%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           L+ MY K     + DA + F S+  ++SV+WN++++G++Q G    A      M      
Sbjct: 141 LLDMYAKCER--VEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVE 198

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           ID   F+ +L    D    +L  QVHA  +K G+ S+  V +++I  YS+CG IEDA+
Sbjct: 199 IDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAE 256



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = -2

Query: 315 DALKQFN-SMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSC 139
           DA + F+ ++E +D V+WNS+L  +  N   E+A   F+ M+ + F  D Y +++V+ + 
Sbjct: 254 DAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAA 313

Query: 138 SDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSK 28
            + +    G+ +H L +K G+E    +++SLI MY K
Sbjct: 314 FEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLK 350



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMV--DALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMP 184
           LI MY    +KC V  DA K F++     S++WNS++ G++Q+G  + AL+ F  M+   
Sbjct: 447 LIFMY----SKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRR 502

Query: 183 FGIDHYAFSAVLRSCSDLATFQLGQQ-VHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
             +DH  F AVL +CS +   + G   + ++    G+       + +I +  + G +++A
Sbjct: 503 VKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEA 562

Query: 6   K 4
           K
Sbjct: 563 K 563


>ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526827|gb|EEF29045.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 708

 Score =  166 bits (419), Expect = 2e-39
 Identities = 85/118 (72%), Positives = 95/118 (80%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           +IAMYL+ ++  M DAL  F+SME KD VSWNSILTGFSQ G SE+AL  FV MR     
Sbjct: 343 VIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVD 402

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           IDHYAFSAVLRSCSDLAT QLGQQ+H L +KSG ESN FVASSLIFMYSKCG+IEDA+
Sbjct: 403 IDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDAR 460



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/117 (29%), Positives = 66/117 (56%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           +++ Y + ++  +  A   F+ M  +D+V+WN++++G+  +G    A   +  M+S    
Sbjct: 40  ILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLM 99

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
            D Y F ++L+  +      +GQQVH+L +K G E + +  S+L+ MY+KC  + DA
Sbjct: 100 PDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDA 156



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 36/118 (30%), Positives = 59/118 (50%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           L+ MY K     + DA   F  +  ++SVSWN+++ GF   G  + A      M      
Sbjct: 143 LLDMYAKCER--VRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVR 200

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           +D   FS +L    +   ++L  Q+H   +K GV+ +  V ++ I  YS+CG +EDA+
Sbjct: 201 LDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAE 258



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LI MY K     + DA K F       S++WNSI+  ++Q+G  + AL  F  MR     
Sbjct: 446 LIFMYSKCG--MIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVK 503

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQ-VHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           +DH  F A L +CS +   + G+  + ++A   G+       +  + ++ + G +++AK
Sbjct: 504 MDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAK 562


>ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  165 bits (418), Expect = 3e-39
 Identities = 84/118 (71%), Positives = 96/118 (81%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LI+MYLK +   M +AL  F S+EFKD VSWNSILTG SQ G SEDA+  F+ MRS    
Sbjct: 343 LISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMD 402

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           IDHY+FSAVLRSCSDLATFQLGQQ+H LALK G+ESN FV+SSLIFMYSKCG+IEDA+
Sbjct: 403 IDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDAR 460



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 38/98 (38%), Positives = 58/98 (59%)
 Frame = -2

Query: 300 FNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSCSDLATF 121
           F+ M  +DSVSWN+++ G    G  E + +    MRS  F +D Y F ++L+  +    F
Sbjct: 56  FDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMF 115

Query: 120 QLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
            LGQQVH++ +K G   N +  S+L+ MY+KC  +EDA
Sbjct: 116 HLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDA 153



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/118 (31%), Positives = 59/118 (50%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           L+ MY K     + DA   F S+   ++VSWN+++ G++Q G  E A      M      
Sbjct: 140 LLDMYAKCEK--LEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEK 197

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           +D   ++ +L    D     L  Q+H   +K G+E    + ++LI  YSKCG ++DAK
Sbjct: 198 VDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAK 255


>ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  165 bits (418), Expect = 3e-39
 Identities = 84/118 (71%), Positives = 96/118 (81%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LI+MYLK +   M +AL  F S+EFKD VSWNSILTG SQ G SEDA+  F+ MRS    
Sbjct: 343 LISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMD 402

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           IDHY+FSAVLRSCSDLATFQLGQQ+H LALK G+ESN FV+SSLIFMYSKCG+IEDA+
Sbjct: 403 IDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDAR 460



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 38/98 (38%), Positives = 58/98 (59%)
 Frame = -2

Query: 300 FNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSCSDLATF 121
           F+ M  +DSVSWN+++ G    G  E + +    MRS  F +D Y F ++L+  +    F
Sbjct: 56  FDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMF 115

Query: 120 QLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
            LGQQVH++ +K G   N +  S+L+ MY+KC  +EDA
Sbjct: 116 HLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDA 153



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/118 (31%), Positives = 59/118 (50%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           L+ MY K     + DA   F S+   ++VSWN+++ G++Q G  E A      M      
Sbjct: 140 LLDMYAKCEK--LEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEK 197

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           +D   ++ +L    D     L  Q+H   +K G+E    + ++LI  YSKCG ++DAK
Sbjct: 198 VDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAK 255


>ref|XP_002310370.1| predicted protein [Populus trichocarpa] gi|222853273|gb|EEE90820.1|
           predicted protein [Populus trichocarpa]
          Length = 711

 Score =  160 bits (404), Expect = 1e-37
 Identities = 83/117 (70%), Positives = 92/117 (78%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LI MYLK+NNK M  AL  F+SM+ KD VSWNSILTGFSQ G SEDAL  F  MRS    
Sbjct: 346 LITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEE 405

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
           ID YA+SAVLRSCSDLA  QLGQQ+H L +K+G +SN FVASSLIFMYSKCG+IEDA
Sbjct: 406 IDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDA 462



 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 39/102 (38%), Positives = 61/102 (59%)
 Frame = -2

Query: 312 ALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSCSD 133
           A K F+ M  KD+V+WN+++TG+ ++G    A  F   M+   F  D Y F ++L+  + 
Sbjct: 55  ACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAH 114

Query: 132 LATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDA 7
                LGQQVH+L +K G E + +  S+L+ MY+KC  +EDA
Sbjct: 115 ACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDA 156



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = -2

Query: 315 DALKQFN-SMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFGIDHYAFSAVLRSC 139
           DA + F+ ++  +D V+WNS+L  +  +   EDA N F+ M+   F  D Y ++ V+ +C
Sbjct: 256 DAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISAC 315

Query: 138 SDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSK 28
              A    G+  HAL +K G+E +  + ++LI MY K
Sbjct: 316 FAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLK 352



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/118 (28%), Positives = 59/118 (50%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           L+ MY K     + DA   F  M  ++ VSWN+++ GF Q G  + A      M+     
Sbjct: 143 LLDMYAKCER--VEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR 200

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQVHALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           ++   F+ +L        ++L  Q+H   +K G+E    + ++ +  YS+CG++EDAK
Sbjct: 201 VEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAK 258



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
 Frame = -2

Query: 357 LIAMYLKVNNKCMVDALKQFNSMEFKDSVSWNSILTGFSQNGLSEDALNFFVGMRSMPFG 178
           LI MY K     + DA K F     + S++WNSI+  ++Q+G  + AL+ F  MR     
Sbjct: 449 LIFMYSKCG--IIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVK 506

Query: 177 IDHYAFSAVLRSCSDLATFQLGQQV-HALALKSGVESNGFVASSLIFMYSKCGVIEDAK 4
           +DH  F AVL +CS +   + G+ V  ++    G+       +  + ++ + G +E+AK
Sbjct: 507 LDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAK 565