BLASTX nr result

ID: Cimicifuga21_contig00030019 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00030019
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI21647.3| unnamed protein product [Vitis vinifera]               73   3e-11
ref|XP_002330447.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>emb|CBI21647.3| unnamed protein product [Vitis vinifera]
          Length = 759

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
 Frame = -1

Query: 569  GNDGREVQSDPHILDEDELKSARQACTICNEDVASSTENLDKDTLNHEQAGRDV--GASD 396
            G  G+EV +DP    E+ +  A     +  +D     E +D           D+  G   
Sbjct: 626  GKTGQEVCTDP----ENCIPCAENMGKVSGQDERKH-EKMDVSAAEISDRKEDISTGIPH 680

Query: 395  HKRRRKRLLKSFAGGISVFGVFLLFFHLRRPNGREKINETSVPPKQIWKTNKGETSGKNR 216
            HK +++  LKS   G +VFG  L+  HLRR + R++  E SV P+Q  K    E S + R
Sbjct: 681  HKPQKRPRLKSLVIGTAVFGAVLVLLHLRRRSSRDETGEPSVRPRQTQKVKCMELSSQKR 740

Query: 215  EQKGRADGVYYPAEKLRF 162
            ++ G  DGV YPAEKLRF
Sbjct: 741  QKGGNVDGV-YPAEKLRF 757


>ref|XP_002330447.1| predicted protein [Populus trichocarpa] gi|222871859|gb|EEF08990.1|
            predicted protein [Populus trichocarpa]
          Length = 840

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
 Frame = -1

Query: 479  EDVASSTENLDK-DTLNHEQA------------GRDVGASDHKRRRKRLLKSFAGGISVF 339
            +D+  STEN+D+ D  NHE+             G  V  +D K  ++ LLK+ A G +V 
Sbjct: 722  KDMICSTENMDRVDDQNHEKVQILAIENSNVTEGPSVEKADCKPPKRPLLKTVAKGTAVV 781

Query: 338  GVFLLFFHLRRPNGREKINETSVPPKQIWKTNKGETSGKNREQKGRADGVYYPAEKLRF 162
            GV L   H R+ N  EK +++     ++ K + G      + QKG      YPAEKLRF
Sbjct: 782  GVLLFLLHFRK-NDTEKTDQSVKQSNRLRKAS-GRNFSSLKSQKGSRTNRMYPAEKLRF 838


Top