BLASTX nr result

ID: Cimicifuga21_contig00029851 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029851
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pen...   114   8e-24
emb|CBI27406.3| unnamed protein product [Vitis vinifera]              114   8e-24
ref|XP_002514579.1| pentatricopeptide repeat-containing protein,...   110   9e-23
ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   104   9e-21

>ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/97 (55%), Positives = 75/97 (77%), Gaps = 1/97 (1%)
 Frame = -2

Query: 288 EMVEDARLVLGKMKGINFKPSVSTYNNLMHSSRHTEEIWEICQEMKASGVPPSEYTNSII 109
           EMV DA  VL KMK +N + S++TYN+L+++ RHT+ +W++  E+KASGVP +EYTN I+
Sbjct: 182 EMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPIL 241

Query: 108 IDGLCKQLRLREAVKFFKENKGKE-SPCIVSFNTLMS 1
           IDGLC+Q RL++AV F +E  G+E  P +VSFN LMS
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMS 278


>emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  114 bits (285), Expect = 8e-24
 Identities = 54/97 (55%), Positives = 75/97 (77%), Gaps = 1/97 (1%)
 Frame = -2

Query: 288 EMVEDARLVLGKMKGINFKPSVSTYNNLMHSSRHTEEIWEICQEMKASGVPPSEYTNSII 109
           EMV DA  VL KMK +N + S++TYN+L+++ RHT+ +W++  E+KASGVP +EYTN I+
Sbjct: 182 EMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPIL 241

Query: 108 IDGLCKQLRLREAVKFFKENKGKE-SPCIVSFNTLMS 1
           IDGLC+Q RL++AV F +E  G+E  P +VSFN LMS
Sbjct: 242 IDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMS 278


>ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546183|gb|EEF47685.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 840

 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/96 (53%), Positives = 73/96 (76%), Gaps = 1/96 (1%)
 Frame = -2

Query: 285 MVEDARLVLGKMKGINFKPSVSTYNNLMHSSRHTEEIWEICQEMKASGVPPSEYTNSIII 106
           MV DA  VL KMK +NF  S+ TYN+L+++ RH+  +W++  E+K SG P SEYT+SI++
Sbjct: 194 MVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKVSGTPQSEYTSSIVV 253

Query: 105 DGLCKQLRLREAVKFFKENKGKE-SPCIVSFNTLMS 1
           DGLC+Q R ++AV FF++ +GKE  P +VSFNT+MS
Sbjct: 254 DGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMS 289


>ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1|
           predicted protein [Populus trichocarpa]
          Length = 745

 Score =  106 bits (265), Expect = 2e-21
 Identities = 51/96 (53%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
 Frame = -2

Query: 285 MVEDARLVLGKMKGINFKPSVSTYNNLMHSSRHTEEIWEICQEMKASGVPPSEYTNSIII 106
           MV DA  VL KMK  N +PS+ TYN+L+++ RHT+ +W++  ++K SG P S  T+SII+
Sbjct: 98  MVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSIIV 157

Query: 105 DGLCKQLRLREAVKFFKENKGKE-SPCIVSFNTLMS 1
           DGLC Q R R+AV F ++N GKE +P +VSFNT+MS
Sbjct: 158 DGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMS 193


>ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  104 bits (259), Expect = 9e-21
 Identities = 47/96 (48%), Positives = 67/96 (69%)
 Frame = -2

Query: 288 EMVEDARLVLGKMKGINFKPSVSTYNNLMHSSRHTEEIWEICQEMKASGVPPSEYTNSII 109
           EM+ DA  V+ KMK +NF+ SV TYN+L+H+ RHT+ +W++  E+K SG P SE T SI+
Sbjct: 184 EMIHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGAPQSECTTSIL 243

Query: 108 IDGLCKQLRLREAVKFFKENKGKESPCIVSFNTLMS 1
           I GLC+Q +L +A+ F  ++     P IVS NT+MS
Sbjct: 244 IHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMS 279


Top