BLASTX nr result
ID: Cimicifuga21_contig00029650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00029650
(326 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514857.1| pentatricopeptide repeat-containing protein,... 140 1e-31
ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat... 138 5e-31
ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pen... 132 2e-29
emb|CBI17644.3| unnamed protein product [Vitis vinifera] 132 2e-29
ref|XP_003624159.1| Pentatricopeptide repeat-containing protein ... 131 5e-29
>ref|XP_002514857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545908|gb|EEF47411.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 832
Score = 140 bits (352), Expect = 1e-31
Identities = 64/107 (59%), Positives = 80/107 (74%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
NL A KLF+EI RDVR+WTIL++GFAQ +M F MQ EGVCPN FTLS VLK
Sbjct: 331 NLSHAHKLFDEILCRDVRTWTILISGFAQTRNFKMVSGLFRRMQKEGVCPNQFTLSSVLK 390
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYAR 324
CC+S+ ++ GK IHGWIL +G+G D+ LENS++DLY+KCG F YA+
Sbjct: 391 CCSSICEIRNGKGIHGWILTSGIGFDIVLENSILDLYVKCGAFDYAK 437
Score = 73.6 bits (179), Expect = 2e-11
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Frame = +1
Query: 7 LDQARKLFEEIPVR--------DVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHF 162
+++A ++F +PV ++ SW+ +++G+ + G E A FI M E V + F
Sbjct: 565 MEEASRMFRNVPVEISCDDPLGEIVSWSSMISGYVRNGEYEYALRTFISMVHEQVLVDKF 624
Query: 163 TLSCVLKCCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCG 306
TL+ V+ CA+ LE+G++IH IL+ G +D L +S++D+Y KCG
Sbjct: 625 TLTSVVSACANTGCLELGRQIHAHILKIGHKVDAHLGSSLIDMYAKCG 672
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/106 (29%), Positives = 59/106 (55%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
+++ + +LF+ + +++ SW ++ G + G +A +M G+ N T S L
Sbjct: 463 DVESSLELFQSLYFKNIASWNTIIDGLMKNGFETIALELLYKMVESGLGFNSVTFSVALN 522
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
+ + +LE+GK+IHG ILR + + + NS++D+Y KCG + A
Sbjct: 523 LVSCLVNLELGKQIHGRILRLIIHDNGFIRNSLLDMYCKCGKMEEA 568
>ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 1011
Score = 138 bits (347), Expect = 5e-31
Identities = 60/107 (56%), Positives = 84/107 (78%)
Frame = +1
Query: 1 HNLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVL 180
+N+ A+KLF+EIP R+ ++WTIL++GFA+ G EM N F EMQ +G CPN +TLS VL
Sbjct: 338 NNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVL 397
Query: 181 KCCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
KCC+ N+L++GK +H W+LRNG+ +DV L NS++DLY+KC VF+YA
Sbjct: 398 KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYA 444
Score = 57.8 bits (138), Expect = 9e-07
Identities = 29/101 (28%), Positives = 55/101 (54%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
+++++ +F +P +DV SW ++ G Q G A M G + T S L
Sbjct: 471 DVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALI 530
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCG 306
+S++ +E+G+++HG +L+ G D + +S+V++Y KCG
Sbjct: 531 LASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCG 571
>ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 132 bits (333), Expect = 2e-29
Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
NL+QA K+FEEIP DV SWT+L++GFA++GL F +MQ +GVCPN FTLS VLK
Sbjct: 336 NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLK 395
Query: 184 CCAS-VNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
C+S VND +GK IHGWILRNG+ LD L NS++D Y+KC F YA
Sbjct: 396 SCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYA 442
Score = 71.6 bits (174), Expect = 6e-11
Identities = 35/83 (42%), Positives = 54/83 (65%)
Frame = +1
Query: 58 SWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLKCCASVNDLEMGKKIHGWI 237
SW+ +++G+ Q G E A F M V + FTL+ V+ CAS LE+G+++HG+I
Sbjct: 603 SWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYI 662
Query: 238 LRNGVGLDVALENSVVDLYMKCG 306
+ G GLDV L +S++D+Y+KCG
Sbjct: 663 QKIGHGLDVFLGSSIIDMYVKCG 685
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/106 (31%), Positives = 57/106 (53%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
++ ++ LF ++P +D SW ++ G + G +A +M G N T S L
Sbjct: 469 DMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALV 528
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
+S++ L +GK+IH +L+ GV D + NS++D+Y KCG + A
Sbjct: 529 LASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKA 574
>emb|CBI17644.3| unnamed protein product [Vitis vinifera]
Length = 628
Score = 132 bits (333), Expect = 2e-29
Identities = 64/107 (59%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
NL+QA K+FEEIP DV SWT+L++GFA++GL F +MQ +GVCPN FTLS VLK
Sbjct: 82 NLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLK 141
Query: 184 CCAS-VNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
C+S VND +GK IHGWILRNG+ LD L NS++D Y+KC F YA
Sbjct: 142 SCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYA 188
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/106 (31%), Positives = 57/106 (53%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
++ ++ LF ++P +D SW ++ G + G +A +M G N T S L
Sbjct: 215 DMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALV 274
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
+S++ L +GK+IH +L+ GV D + NS++D+Y KCG + A
Sbjct: 275 LASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKA 320
>ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87162577|gb|ABD28372.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355499174|gb|AES80377.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 755
Score = 131 bits (330), Expect = 5e-29
Identities = 61/107 (57%), Positives = 81/107 (75%), Gaps = 1/107 (0%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQM-GLPEMAKNFFIEMQIEGVCPNHFTLSCVL 180
NLD A KLF+EI ++ ++WTIL++GFA+ G E+ + F EMQ +G CPN +TLS VL
Sbjct: 82 NLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVL 141
Query: 181 KCCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCGVFKYA 321
KCC+ N+++ GK IH WILRNGVG DV LENS++DLY+KC F+YA
Sbjct: 142 KCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYA 188
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/101 (28%), Positives = 56/101 (55%)
Frame = +1
Query: 4 NLDQARKLFEEIPVRDVRSWTILMTGFAQMGLPEMAKNFFIEMQIEGVCPNHFTLSCVLK 183
+++++ ++F P +DV SW ++ G Q G +A M G + T S L
Sbjct: 215 DVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALI 274
Query: 184 CCASVNDLEMGKKIHGWILRNGVGLDVALENSVVDLYMKCG 306
+S++ +E+G+++HG +L G+ D + +S+V++Y KCG
Sbjct: 275 LVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCG 315