BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029621
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]   110   9e-23
ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat...    95   5e-18
ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat...    95   5e-18
ref|XP_002876202.1| pentatricopeptide repeat-containing protein ...    91   7e-17
ref|NP_190904.1| pentatricopeptide repeat-containing protein [Ar...    91   1e-16

>emb|CAN71830.1| hypothetical protein VITISV_033606 [Vitis vinifera]
          Length = 799

 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/93 (54%), Positives = 68/93 (73%)
 Frame = +2

Query: 2   LRRGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVG 181
           LRRG+ VH +++ +G   D+V+MNSL+DMY KC  + D+ER F E D RD+ TWTTM+VG
Sbjct: 171 LRRGQCVHGEVLITGLLGDVVVMNSLIDMYMKCEMVGDSERVFDEMDVRDVITWTTMIVG 230

Query: 182 YVQSGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           Y+Q G G E L   +EML S+VRP SAT +G+L
Sbjct: 231 YMQMGRGLEGLELLKEMLSSQVRPSSATLAGVL 263



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 25/81 (30%), Positives = 50/81 (61%)
 Frame = +2

Query: 8   RGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYV 187
           +GR +H  ++ +GFE  LV++N+++ MY+K     +  + F   D R++F+WT M+    
Sbjct: 72  QGREIHKHMVNAGFEPSLVLLNNIMIMYSKFGDFGETFKVFEGMDERNLFSWTVMIGACS 131

Query: 188 QSGYGEEALGFFREMLRSEVR 250
           ++G  E+A+  + +M+ S V+
Sbjct: 132 KNGDAEKAIELYGKMISSGVK 152


>ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 40/90 (44%), Positives = 63/90 (70%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ VH  I+R GF+ ++ ++NSL+DMYAKC S+ D+ + F +   RD+ +WTTM++GY  
Sbjct: 330 GQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGA 389

Query: 191 SGYGEEALGFFREMLRSEVRPQSATFSGIL 280
            GYG+EA+  F EM++S ++P    F G+L
Sbjct: 390 HGYGKEAVKLFDEMVQSGIQPDRIVFMGVL 419



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ +HA + + G   D  +MNS++DMY +C  L DA+R F E   +++ TW T++ GY +
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 191 SGYGEEALGFFREMLRSEVRPQSATFSGI 277
           S    E+L  F +M     +P   TF+ I
Sbjct: 290 SD-SSESLSLFFQMGSEGYKPNCFTFTSI 317



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYA-KCFSLRDAERAFYECDARDIFTWTTMLVGYV 187
           G   H+   + G +  + + N+L+DMYA  C ++ DA   F +   +   +WTT++ G+ 
Sbjct: 128 GALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFT 187

Query: 188 QSGYGEEALGFFREMLRSEVRPQSATFS 271
             G G   L  FR+ML  +V P S +FS
Sbjct: 188 HRGDGYSGLLAFRQMLLEDVGPNSFSFS 215


>ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 40/90 (44%), Positives = 63/90 (70%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ VH  I+R GF+ ++ ++NSL+DMYAKC S+ D+ + F +   RD+ +WTTM++GY  
Sbjct: 330 GQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGA 389

Query: 191 SGYGEEALGFFREMLRSEVRPQSATFSGIL 280
            GYG+EA+  F EM++S ++P    F G+L
Sbjct: 390 HGYGKEAVKLFDEMVQSGIQPDRIVFMGVL 419



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 32/89 (35%), Positives = 51/89 (57%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ +HA + + G   D  +MNS++DMY +C  L DA+R F E   +++ TW T++ GY +
Sbjct: 230 GKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYER 289

Query: 191 SGYGEEALGFFREMLRSEVRPQSATFSGI 277
           S    E+L  F +M     +P   TF+ I
Sbjct: 290 SD-SSESLSLFFQMGSEGYKPNCFTFTSI 317



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYA-KCFSLRDAERAFYECDARDIFTWTTMLVGYV 187
           G   H+   + G +  + + N+L+DMYA  C ++ DA   F +   +   +WTT++ G+ 
Sbjct: 128 GALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFT 187

Query: 188 QSGYGEEALGFFREMLRSEVRPQSATFS 271
             G G   L  FR+ML  +V P S +FS
Sbjct: 188 HRGDGYSGLLAFRQMLLEDVGPNSFSFS 215


>ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322040|gb|EFH52461.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 769

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 45/93 (48%), Positives = 58/93 (62%)
 Frame = +2

Query: 2   LRRGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVG 181
           L+ G  VH    ++G   +  I N L+DMYAKC SLR A R F   D  D+ +W+T++VG
Sbjct: 486 LKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVG 545

Query: 182 YVQSGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           Y QSG+GEEAL  FREM  S + P   TF G+L
Sbjct: 546 YAQSGFGEEALILFREMKSSGIEPNHVTFVGVL 578



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 31/93 (33%), Positives = 56/93 (60%)
 Frame = +2

Query: 2   LRRGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVG 181
           L +GR +H  I+ S  ++D ++ N ++ MY KC SLRDA   F     R++ ++T+++ G
Sbjct: 80  LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITG 139

Query: 182 YVQSGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           Y Q+G   EA+  + +ML++++ P    F  I+
Sbjct: 140 YSQNGQEAEAITLYLKMLQADLVPDQFAFGSII 172



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/75 (33%), Positives = 45/75 (60%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ +HA +I+      L+  N+L+ MY +   + DA + FY   A+D+ +W++++ G+ Q
Sbjct: 184 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQ 243

Query: 191 SGYGEEALGFFREML 235
            G+  EAL   +EML
Sbjct: 244 LGFEFEALSHLKEML 258


>ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
           gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis
           thaliana] gi|332645554|gb|AEE79075.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/93 (46%), Positives = 59/93 (63%)
 Frame = +2

Query: 2   LRRGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVG 181
           L+ G  VH   +++G   +  I N L+DMYAKC SL  A R F   D RD+ +W+T++VG
Sbjct: 489 LKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVG 548

Query: 182 YVQSGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           Y QSG+GEEAL  F+EM  + + P   TF G+L
Sbjct: 549 YAQSGFGEEALILFKEMKSAGIEPNHVTFVGVL 581



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/93 (34%), Positives = 56/93 (60%)
 Frame = +2

Query: 2   LRRGRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVG 181
           L +GR +H  I+ S  ++D ++ N ++ MY KC SLRDA   F     R++ ++T+++ G
Sbjct: 83  LAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITG 142

Query: 182 YVQSGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           Y Q+G G EA+  + +ML+ ++ P    F  I+
Sbjct: 143 YSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSII 175



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 25/75 (33%), Positives = 44/75 (58%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G+ +HA +I+      L+  N+L+ MY +   + DA R FY    +D+ +W++++ G+ Q
Sbjct: 187 GKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQ 246

Query: 191 SGYGEEALGFFREML 235
            G+  EAL   +EML
Sbjct: 247 LGFEFEALSHLKEML 261



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 44/90 (48%)
 Frame = +2

Query: 11  GRWVHADIIRSGFEWDLVIMNSLVDMYAKCFSLRDAERAFYECDARDIFTWTTMLVGYVQ 190
           G  +H   I+S    + +   SL DMYA+C  L  A R F + +  D  +W  ++ G   
Sbjct: 289 GSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLAN 348

Query: 191 SGYGEEALGFFREMLRSEVRPQSATFSGIL 280
           +GY +EA+  F +M  S   P + +   +L
Sbjct: 349 NGYADEAVSVFSQMRSSGFIPDAISLRSLL 378