BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029586
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...   200   9e-50
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...   190   1e-46
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...   180   1e-43
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,...   179   2e-43
ref|XP_003596877.1| Pentatricopeptide repeat-containing protein ...   179   2e-43

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score =  200 bits (509), Expect = 9e-50
 Identities = 93/151 (61%), Positives = 127/151 (84%)
 Frame = -3

Query: 454 ISFYASLIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFS 275
           I  +A+L++SC S ++L+KLKQ HA+I+T+GIS HDFIRAKL++SYA+C+QM +A+YIFS
Sbjct: 7   IPSFATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIFS 66

Query: 274 VTNRQSTFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNL 95
           +TNR+ TFLYN +IRGY+S  LF +S++I+CQML   K  D +TLP+VLKSC+GLS L L
Sbjct: 67  LTNRRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCSGLSALRL 126

Query: 94  GRRIHVAVLVNGFSTDVATSNALITMYSKCG 2
           GR++H AV+ NG ++D+AT NALI+MYSKCG
Sbjct: 127 GRQVHCAVVANGLASDLATINALISMYSKCG 157


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score =  190 bits (483), Expect = 1e-46
 Identities = 93/151 (61%), Positives = 119/151 (78%)
 Frame = -3

Query: 454 ISFYASLIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFS 275
           + FYA+L+++C+S K+LK LK+ HA  +T+GIS +DFIR+KL+SSYA C+Q+HEA  +FS
Sbjct: 8   VPFYATLLDACSSSKHLKNLKRIHALTITLGISRNDFIRSKLVSSYACCAQLHEANILFS 67

Query: 274 VTNRQSTFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNL 95
            T RQ TFL+N +IR Y+S NLF +S+ I+ QMLL  K  D HTLP VLKSCAGLS L L
Sbjct: 68  FTIRQPTFLFNSLIRAYSSLNLFSQSLCIFRQMLLARKPFDRHTLPVVLKSCAGLSALRL 127

Query: 94  GRRIHVAVLVNGFSTDVATSNALITMYSKCG 2
           G+++H AVLVNGF  D+A SNALI MYSKCG
Sbjct: 128 GQQVHGAVLVNGFGLDLANSNALINMYSKCG 158


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  180 bits (456), Expect = 1e-43
 Identities = 86/148 (58%), Positives = 112/148 (75%)
 Frame = -3

Query: 445 YASLIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFSVTN 266
           YA+L+  C S KN+  LK  HA+ + +GISH DFIR KL+S YA+CS++H+A  +FS TN
Sbjct: 11  YATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSFTN 70

Query: 265 RQSTFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNLGRR 86
           R+ TFLYN +IR Y S NLF+E+++I+ +M L  K  D HTLP VLKSCAGLS L LG++
Sbjct: 71  RKPTFLYNSLIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQ 130

Query: 85  IHVAVLVNGFSTDVATSNALITMYSKCG 2
           +H AVLVNGF+ D+  SNALI MY+KCG
Sbjct: 131 VHGAVLVNGFALDLKNSNALINMYAKCG 158



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
 Frame = -3

Query: 436 LIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFSVTNRQS 257
           +++SC  +  L+  KQ H  +L  G +        LI+ YA C ++  A  +F     ++
Sbjct: 115 VLKSCAGLSALRLGKQVHGAVLVNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERN 174

Query: 256 TFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNLGRRIHV 77
              ++ M+ GY     F E   ++ +M+ VG++ D+ +   VL +C+    +  GR I  
Sbjct: 175 EVTWSTMMAGYGMHGRFEEVFEMFNRMVEVGERMDNVSFTVVLTACSHGGFVEKGREIFE 234

Query: 76  AVLVN-GFSTDVATSNALITMYSKCG 2
            + V  G   DV     ++ M  + G
Sbjct: 235 MMKVRFGVKPDVRHYTCMVDMLGRVG 260


>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 302

 Score =  179 bits (455), Expect = 2e-43
 Identities = 87/151 (57%), Positives = 114/151 (75%)
 Frame = -3

Query: 454 ISFYASLIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFS 275
           I  YASLI++C + KN   L Q HAQ +T GI H DFIR+KL+S+YA+C+QM +AA +FS
Sbjct: 4   IPLYASLIDACITTKNFTTLIQIHAQTITNGIYHRDFIRSKLVSAYASCTQMRQAALLFS 63

Query: 274 VTNRQSTFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNL 95
            TNRQ+TFL+N +IR YAS NLF  S++ + +ML   K  D HTLPSVLKSCAGLS + L
Sbjct: 64  FTNRQTTFLFNSLIRAYASLNLFSHSLSFFRRMLDACKPIDRHTLPSVLKSCAGLSAVRL 123

Query: 94  GRRIHVAVLVNGFSTDVATSNALITMYSKCG 2
           G+++H  +L+NG + D+A SNALI MY+KCG
Sbjct: 124 GQQVHGILLINGLAFDLANSNALINMYAKCG 154


>ref|XP_003596877.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240912|gb|ABD32770.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485925|gb|AES67128.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score =  179 bits (454), Expect = 2e-43
 Identities = 85/148 (57%), Positives = 112/148 (75%)
 Frame = -3

Query: 445 YASLIESCTSIKNLKKLKQTHAQILTIGISHHDFIRAKLISSYANCSQMHEAAYIFSVTN 266
           YA+L+  C S KN+  LK  HA+ + +GISH DFIR KL+S YA+CS++H+A  +FS TN
Sbjct: 11  YATLLNKCFSSKNINSLKIIHARTIRLGISHDDFIRTKLVSCYASCSKLHQANILFSFTN 70

Query: 265 RQSTFLYNCMIRGYASQNLFRESINIYCQMLLVGKQNDSHTLPSVLKSCAGLSTLNLGRR 86
           R+ TFLYN +IR Y S NLF+E+++++ +M L  K  D HTLP VLKSCAGLS L LG++
Sbjct: 71  RKPTFLYNSLIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQ 130

Query: 85  IHVAVLVNGFSTDVATSNALITMYSKCG 2
           +H AVLVNGF+ D+  SNALI MY+KCG
Sbjct: 131 VHGAVLVNGFALDLKNSNALINMYAKCG 158