BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029531
         (636 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containi...    92   1e-16
ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containi...    92   1e-16
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...    92   1e-16
dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]                       86   7e-15
ref|NP_178657.1| pentatricopeptide repeat-containing protein [Ar...    86   7e-15

>ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
 Frame = -2

Query: 413 MSLLFYPNFLSRVLLRSSTTVTF-TASIHVHANGSHSHKEVIFDSESWVVKVICSLIVFR 237
           M+LLF+ +   R+   + +   F + +  V        +E+I  SE+W+VKV+C+L  FR
Sbjct: 1   MTLLFFSSRAYRLRTSNFSIAQFYSLADSVSRARPFCDREIIRHSEAWLVKVVCTLF-FR 59

Query: 236 CAKSSTKLDFSCLEYFGKGLNPSITFEVIKRLKDPNLGLKFFDFMKCE-GINHSTSTYNL 60
               +     +C  Y  + LNPSI FEVIKR  DP LGLKFF+F +    INH+ +TY+L
Sbjct: 60  SHSLN-----ACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDL 114

Query: 59  LVKSLCQNGQHDAACKLVF 3
           L+++LC+ G +D+A K+VF
Sbjct: 115 LMRNLCKVGLNDSA-KIVF 132


>ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 2/139 (1%)
 Frame = -2

Query: 413 MSLLFYPNFLSRVLLRSSTTVTF-TASIHVHANGSHSHKEVIFDSESWVVKVICSLIVFR 237
           M+LLF+ +   R+   + +   F + +  V        +E+I  SE+W+VKV+C+L  FR
Sbjct: 1   MTLLFFSSRAYRLRTSNFSIAQFYSLADSVSRARPFCDREIIRHSEAWLVKVVCTLF-FR 59

Query: 236 CAKSSTKLDFSCLEYFGKGLNPSITFEVIKRLKDPNLGLKFFDFMKCE-GINHSTSTYNL 60
               +     +C  Y  + LNPSI FEVIKR  DP LGLKFF+F +    INH+ +TY+L
Sbjct: 60  SHSLN-----ACFGYLSRNLNPSIAFEVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDL 114

Query: 59  LVKSLCQNGQHDAACKLVF 3
           L+++LC+ G +D+A K+VF
Sbjct: 115 LMRNLCKVGLNDSA-KIVF 132


>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 91.7 bits (226), Expect = 1e-16
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
 Frame = -2

Query: 428 GLAFQMSLLFYPNFLSRVLLRSSTTVTFTASIHVHANG-SHSHKEVIFDSESWVVKVICS 252
           G+A QM+LL +    SRV  R+S      A  H HA G S +  EVI + E+W+VKVIC+
Sbjct: 28  GVALQMTLLLFITRPSRV--RASKIAI--AQFHEHAVGISRNRPEVIQNPENWIVKVICT 83

Query: 251 LIVFRCAKSSTKLDFSCLEYFGKGLNPSITFEVIKRLKDPNLGLKFFDFMKCE-GINHST 75
           L V      +  LD +CL+YF K L PSI FEV++ L +P L LKFF   +    + HS 
Sbjct: 84  LCV-----RTHSLD-ACLDYFSKTLTPSIAFEVVRGLNNPELALKFFQLSRVNLNLCHSF 137

Query: 74  STYNLLVKSLCQNGQHDAA 18
            TY+ L++SL + G H++A
Sbjct: 138 RTYSFLLRSLSEMGFHESA 156


>dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
 Frame = -2

Query: 362 STTVTFTASIHVHANGS-------HSHKEVIFDSESWVVKVICSLIVFRCAKSSTKLDFS 204
           +T  T  A  H H++G        ++ +EVI   E+W+VK++ +L V+R   S       
Sbjct: 4   TTFATAIAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDL----- 58

Query: 203 CLEYFGKGLNPSITFEVIKRL-KDPNLGLKFFDFMKCE-GINHSTSTYNLLVKSLCQNGQ 30
           C  Y  K LNP I+FEV+K+L  +P++G +F++F + +  I HS  TYNLL +SLC+ G 
Sbjct: 59  CFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGL 118

Query: 29  HDAA 18
           HD A
Sbjct: 119 HDLA 122


>ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|42570711|ref|NP_973429.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein
           [Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330250896|gb|AEC05990.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330250897|gb|AEC05991.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
 Frame = -2

Query: 362 STTVTFTASIHVHANGS-------HSHKEVIFDSESWVVKVICSLIVFRCAKSSTKLDFS 204
           +T  T  A  H H++G        ++ +EVI   E+W+VK++ +L V+R   S       
Sbjct: 4   TTFATAIAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDL----- 58

Query: 203 CLEYFGKGLNPSITFEVIKRL-KDPNLGLKFFDFMKCE-GINHSTSTYNLLVKSLCQNGQ 30
           C  Y  K LNP I+FEV+K+L  +P++G +F++F + +  I HS  TYNLL +SLC+ G 
Sbjct: 59  CFCYLSKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGL 118

Query: 29  HDAA 18
           HD A
Sbjct: 119 HDLA 122