BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029427
         (1726 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277737.2| PREDICTED: ATP-dependent DNA helicase pcrA-l...   398   e-108
ref|XP_003555493.1| PREDICTED: ATP-dependent DNA helicase pcrA-l...   369   1e-99
ref|XP_003590707.1| ATP-dependent DNA helicase pcrA [Medicago tr...   357   4e-96
emb|CBI38559.3| unnamed protein product [Vitis vinifera]              352   2e-94
gb|ACY64665.1| SRS2 [Arabidopsis thaliana]                            352   2e-94

>ref|XP_002277737.2| PREDICTED: ATP-dependent DNA helicase pcrA-like [Vitis vinifera]
          Length = 1113

 Score =  398 bits (1022), Expect = e-108
 Identities = 237/456 (51%), Positives = 283/456 (62%), Gaps = 3/456 (0%)
 Frame = -1

Query: 1360 RVPLAEVQINTPYSIGSKFGRITEVNSIRSCPERISRKNGDDNVSYGSRIVEASIEDESK 1181
            R+PLAEV INTP     K                            G +  +   E  S 
Sbjct: 31   RLPLAEVSINTPSPFSKK----------------------------GFKTTDGECEKSSC 62

Query: 1180 SALTITSIKENGSTERILKNDVDNVNYGLGI--VEAPIKDGSTSNSFITPSRQSECANLS 1007
            S      I  NGS          +V+ GL +  V  P+ DG   +S  TP +   C ++ 
Sbjct: 63   SG----GITINGSK---------SVHDGLCVRAVGVPLVDGFILDSSETPMKGKVCPSVG 109

Query: 1006 DAFSYAADLDDDFDELVLQQIDALCEERSARKLEHRATPHGDPSAGSRCN-ENGGVGRTF 830
            D+      LDDD  E +L++IDALCE++SA K E +  P+   S  S+   +NGG   + 
Sbjct: 110  DSLMSTNILDDDLCESILEEIDALCEQKSAAKTEGQC-PNSIISMESQFRVKNGGKDSSN 168

Query: 829  XXXXXXXXXXXXEGTLELRDKLERLVEGSGGIQAMDIGSFPKAYSDYLQALNDQQKEAAC 650
                           L L   L      SG  QA    S P  YS YLQ+LND Q+EAAC
Sbjct: 169  WGSVDAEKFLLTASMLRLEGDLN-----SGAEQAAQPASMPDEYSKYLQSLNDTQREAAC 223

Query: 649  SDISTPLMIVAGPGSGKTSTMVGRVLMLLNEGIGPTNILAMTFTTAAASEMRDRIGAVAG 470
            SDIS PLMIVAGPGSGKTSTMVGR+LMLLNEGI P+NILAMTFTTAAASEM  RI AVAG
Sbjct: 224  SDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAMTFTTAAASEMSGRIAAVAG 283

Query: 469  KEAAKQLTISTFHSFCLQLCRTHADKLGRTAEFLIYGQGQQRRAIIEAVRLFESKKSMGE 290
            KE AK++T+STFHSF LQLCR+HA+KLGRT+EFLIYG GQQRRAIIEAVR+FE++ S   
Sbjct: 284  KETAKEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQQRRAIIEAVRIFETENSKKN 343

Query: 289  DLDASKLDQYGDMSCGQYFKDKSKKWQKFVSQAKASGKTPAECRIMGDEIGATILMNYDG 110
            +  +   ++  D++  Q FKDKSKKWQKFV+QAKASGKTP ECR MGDEIGA+IL NY  
Sbjct: 344  NNGSKVGEESNDINSPQNFKDKSKKWQKFVTQAKASGKTPEECRNMGDEIGASILGNYSK 403

Query: 109  ILRSCNALDYHDLISCSVNLLTDFPEVCAESQDLWK 2
            ILR+CNALDYHDLISCSV LL+DFPEV  E Q+ WK
Sbjct: 404  ILRTCNALDYHDLISCSVKLLSDFPEVFRECQESWK 439


>ref|XP_003555493.1| PREDICTED: ATP-dependent DNA helicase pcrA-like [Glycine max]
          Length = 1123

 Score =  369 bits (948), Expect = 1e-99
 Identities = 236/485 (48%), Positives = 290/485 (59%), Gaps = 9/485 (1%)
 Frame = -1

Query: 1429 KRPHNAA-ISGHNPLKPGDIIGNS---RVPLAEVQINTPYSIGSKFGRITEVNSIRSCPE 1262
            KRP +++ +  H     GD+   S   RVPLAEV +N   +IGS  G           P+
Sbjct: 23   KRPSDSSPLHPHRIKSAGDVASVSVAKRVPLAEVPLNRLNAIGSVHG---------PSPD 73

Query: 1261 RISRKNGDDNVSYGSRIVEASIEDESKSALTITSIKENGSTERILKNDVDNVNYGLGIVE 1082
             I       + S+ +R V               S+   GS +  L   +           
Sbjct: 74   AI-------HSSFSARTV---------------SVPAVGSADENLCRSL----------- 100

Query: 1081 APIKDGSTSNSFITPSRQSECANLS--DAFSYAADLDDDFDELVLQQIDALCEERSARKL 908
                       F TP R+ E +     D FS    LDDDFD+  L+QID LCE++SA   
Sbjct: 101  -----------FETPRREPEGSKPKQLDCFSTTGLLDDDFDDSFLEQIDILCEQKSA--- 146

Query: 907  EHRATPHGDPSAGSRCNENGGVG---RTFXXXXXXXXXXXXEGTLELRDKLERLVEGSGG 737
            E +A    D    S+ N  G V     +                +EL D  E  V+ S  
Sbjct: 147  EQQADRSSDEKLSSKSNVVGDVNLSSESGTVSEGIGNGHLLSSGIEL-DSREEEVDSSW- 204

Query: 736  IQAMDIGSFPKAYSDYLQALNDQQKEAACSDISTPLMIVAGPGSGKTSTMVGRVLMLLNE 557
             + +   + P+ Y  YL++LND+Q+EAAC+DISTPLMIVAGPGSGKTSTMVGRVLMLLNE
Sbjct: 205  -RDLLNSTMPEEYLKYLKSLNDRQREAACTDISTPLMIVAGPGSGKTSTMVGRVLMLLNE 263

Query: 556  GIGPTNILAMTFTTAAASEMRDRIGAVAGKEAAKQLTISTFHSFCLQLCRTHADKLGRTA 377
            GI P+NILAMTFTTAAASEMR+RIGA+AGK  AK+LTISTFHSF LQLCR+H +KLGRT+
Sbjct: 264  GISPSNILAMTFTTAAASEMRERIGAIAGKATAKELTISTFHSFSLQLCRSHGEKLGRTS 323

Query: 376  EFLIYGQGQQRRAIIEAVRLFESKKSMGEDLDASKLDQYGDMSCGQYFKDKSKKWQKFVS 197
            EFLIYGQGQQR AIIEA+RL E  KS  +D      +    ++  + FKDK+KKWQKFV+
Sbjct: 324  EFLIYGQGQQRNAIIEAIRLLEIGKSENKDGALLIGELSNSLNNPKQFKDKAKKWQKFVA 383

Query: 196  QAKASGKTPAECRIMGDEIGATILMNYDGILRSCNALDYHDLISCSVNLLTDFPEVCAES 17
            QAKASG+T AE R MG+EIGA IL NY+ IL+SCNALDYHDLISCSV LL+DFPEV  E 
Sbjct: 384  QAKASGRTSAEYRKMGNEIGAAILKNYNNILKSCNALDYHDLISCSVKLLSDFPEVFKEC 443

Query: 16   QDLWK 2
            QD WK
Sbjct: 444  QDSWK 448


>ref|XP_003590707.1| ATP-dependent DNA helicase pcrA [Medicago truncatula]
            gi|355479755|gb|AES60958.1| ATP-dependent DNA helicase
            pcrA [Medicago truncatula]
          Length = 906

 Score =  357 bits (917), Expect = 4e-96
 Identities = 238/564 (42%), Positives = 315/564 (55%), Gaps = 88/564 (15%)
 Frame = -1

Query: 1429 KRPHNAAISGHNPLKP--------GDIIGNSRVPLAEVQINTPYSIG------------S 1310
            KR  +++IS    +K         G +    RVPLAEV +N  +S G            S
Sbjct: 23   KRASDSSISSPYQIKSLCDVDGAKGRVRVGKRVPLAEVPLNRLHSSGNGGEASSDVICCS 82

Query: 1309 KFGRITEVNSIRSCPERISRKN---------GDDNVS----YGSRIVEASIED------- 1190
               R   V ++ +  E + + N         G ++ S    Y S +++   +D       
Sbjct: 83   SSARTVVVPAVSAVKENLCQSNFETPRKESGGFESESLDYFYASGLLDDDFDDSILEQID 142

Query: 1189 ---ESKSALTITSIKENGST--ERILK--NDVDNVNYGLGI-VEAPIKDGSTSNS----- 1049
               E KSA+    ++  G +  E++    N V NV+ GLG  V   I +   + S     
Sbjct: 143  IMCEEKSAVKTAGVEGLGHSCHEKVSSEGNVVGNVDMGLGTNVSKDIGNDDLNESILEQI 202

Query: 1048 ---FITPSRQSECA---------NLSDAFSYAADLD-----------------DDFDELV 956
               F   S + E            +S   S  +++D                 DDFDE +
Sbjct: 203  DILFEQKSAEKEAGMGIEHNCRERVSSESSVVSNVDMDLGTSAFPKDIGNGEIDDFDESI 262

Query: 955  LQQIDALCEERSARKLEHRATPHGDPSAGSRCNENGGVGRTFXXXXXXXXXXXXEGTLEL 776
            L+QID LCE++SA K   +     D S     +   G+  T              G+ ++
Sbjct: 263  LEQIDILCEQKSAVKAAGQGL---DQSCQENVSSESGLVCTVDMSLATSAVSEGIGSGDM 319

Query: 775  R------DKLERLVEGSGGIQAMDIGSFPKAYSDYLQALNDQQKEAACSDISTPLMIVAG 614
                   D  E  V+     +++  G+ P+ YS YL++LN++Q+EAAC+D+STPLMIVAG
Sbjct: 320  LCFGIDLDHKEEHVDSETTRKSLPSGTMPEEYSKYLKSLNERQREAACTDVSTPLMIVAG 379

Query: 613  PGSGKTSTMVGRVLMLLNEGIGPTNILAMTFTTAAASEMRDRIGAVAGKEAAKQLTISTF 434
            PGSGKTSTMVGRVLMLLNEGI P NILAMTFT AAA+EMR RIGA+AGK+ AK+LTISTF
Sbjct: 380  PGSGKTSTMVGRVLMLLNEGISPLNILAMTFTAAAAAEMRKRIGAIAGKQTAKELTISTF 439

Query: 433  HSFCLQLCRTHADKLGRTAEFLIYGQGQQRRAIIEAVRLFESKKSMGEDLDASKLDQYGD 254
            HSFCLQLCR+HA+KLGRT+EFLIYGQ QQR AIIEA RL E++ S  ++ +    +    
Sbjct: 440  HSFCLQLCRSHAEKLGRTSEFLIYGQWQQRNAIIEATRLLENETSKHKNGELLIGEASDG 499

Query: 253  MSCGQYFKDKSKKWQKFVSQAKASGKTPAECRIMGDEIGATILMNYDGILRSCNALDYHD 74
            +   + FKDK+KKWQ FV+QAKASG+T AE R MG++IGA IL NY  IL+SCNA+DYHD
Sbjct: 500  LKTPKQFKDKAKKWQNFVTQAKASGRTSAEYRDMGNQIGAEILENYSNILKSCNAVDYHD 559

Query: 73   LISCSVNLLTDFPEVCAESQDLWK 2
            LIS SV LLTDFPEV  ESQD WK
Sbjct: 560  LISYSVKLLTDFPEVFRESQDSWK 583


>emb|CBI38559.3| unnamed protein product [Vitis vinifera]
          Length = 951

 Score =  352 bits (903), Expect = 2e-94
 Identities = 176/236 (74%), Positives = 200/236 (84%)
 Frame = -1

Query: 709 PKAYSDYLQALNDQQKEAACSDISTPLMIVAGPGSGKTSTMVGRVLMLLNEGIGPTNILA 530
           P  YS YLQ+LND Q+EAACSDIS PLMIVAGPGSGKTSTMVGR+LMLLNEGI P+NILA
Sbjct: 2   PDEYSKYLQSLNDTQREAACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILA 61

Query: 529 MTFTTAAASEMRDRIGAVAGKEAAKQLTISTFHSFCLQLCRTHADKLGRTAEFLIYGQGQ 350
           MTFTTAAASEM  RI AVAGKE AK++T+STFHSF LQLCR+HA+KLGRT+EFLIYG GQ
Sbjct: 62  MTFTTAAASEMSGRIAAVAGKETAKEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQ 121

Query: 349 QRRAIIEAVRLFESKKSMGEDLDASKLDQYGDMSCGQYFKDKSKKWQKFVSQAKASGKTP 170
           QRRAIIEAVR+FE++ S   +  +   ++  D++  Q FKDKSKKWQKFV+QAKASGKTP
Sbjct: 122 QRRAIIEAVRIFETENSKKNNNGSKVGEESNDINSPQNFKDKSKKWQKFVTQAKASGKTP 181

Query: 169 AECRIMGDEIGATILMNYDGILRSCNALDYHDLISCSVNLLTDFPEVCAESQDLWK 2
            ECR MGDEIGA+IL NY  ILR+CNALDYHDLISCSV LL+DFPEV  E Q+ WK
Sbjct: 182 EECRNMGDEIGASILGNYSKILRTCNALDYHDLISCSVKLLSDFPEVFRECQESWK 237


>gb|ACY64665.1| SRS2 [Arabidopsis thaliana]
          Length = 1147

 Score =  352 bits (903), Expect = 2e-94
 Identities = 191/361 (52%), Positives = 243/361 (67%), Gaps = 6/361 (1%)
 Frame = -1

Query: 1066 GSTSNSFITPSRQSECANLSDAFSYAADLDDDFDELVLQQIDALCEERSARKLEHRATPH 887
            GS S +F+TP ++ E   LS+  S ++ LDDDFD+ +L++ID +CE+ SARK   +    
Sbjct: 124  GSLSEAFVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQ-SARKAACQTPTT 182

Query: 886  GDPSAGSRCNENGGVGRTFXXXXXXXXXXXXEGTLELRDKLERLVEGSGGIQAMDIGSFP 707
                  S+ N++     +                L+L ++   +      + +M     P
Sbjct: 183  SIYQTPSKDNKSSDPKASLDFRDVEKFEPDSNVKLKLDEETPTIAADPALLNSM-----P 237

Query: 706  KAYSDYLQALNDQQKEAACSDISTPLMIVAGPGSGKTSTMVGRVLMLLNEGIGPTNILAM 527
               S Y+ +LND+Q++AACS+ISTPLM++AGPGSGKTSTMVGRVL+LLNEG+ P+NILAM
Sbjct: 238  DECSKYMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAM 297

Query: 526  TFTTAAASEMRDRIGAVAGKEAAKQLTISTFHSFCLQLCRTHADKLGRTAEFLIYGQGQQ 347
            TFT AA SEMR+RIG  AGK+AAK +TISTFHSF LQLCR HADKL RT+EF +YG GQQ
Sbjct: 298  TFTKAATSEMRERIGKSAGKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQ 357

Query: 346  RRAIIEAVRLFESKKSMGEDLDASKLDQYG------DMSCGQYFKDKSKKWQKFVSQAKA 185
            RRAIIEAVRL+E +K  G           G         C +Y KD SKKWQKFV+Q KA
Sbjct: 358  RRAIIEAVRLYEEEKKNGSKTSVPCESGEGLNGAGAGAVCPEYAKDLSKKWQKFVTQGKA 417

Query: 184  SGKTPAECRIMGDEIGATILMNYDGILRSCNALDYHDLISCSVNLLTDFPEVCAESQDLW 5
            SGK+P +CR MG+EIGA IL NY+ IL++C+ALDYHDLISCSV LL+DFPEV  E QD W
Sbjct: 418  SGKSPEQCRKMGNEIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPEVFKECQDTW 477

Query: 4    K 2
            K
Sbjct: 478  K 478