BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029423
         (305 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              118   4e-25
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...   115   5e-24
emb|CCH50966.1| T4.5 [Malus x robusta]                                113   2e-23
gb|AAB82754.1| retrofit [Oryza longistaminata]                        112   3e-23
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   110   9e-23

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  118 bits (296), Expect = 4e-25
 Identities = 49/74 (66%), Positives = 62/74 (83%)
 Frame = -2

Query: 304 LHHTKPNYSFLRIFGCACFPWLRPYTKNKLQSRSKLCVFIGYSLHHKGYKCLDPSTGRIF 125
           L H  P Y  L++FGCACFP+LRPY  +KLQ RSK CVF+GYSL+H+GY+C DPS+GR++
Sbjct: 613 LFHRVPQYHSLKVFGCACFPYLRPYNSSKLQLRSKRCVFLGYSLNHQGYRCFDPSSGRVY 672

Query: 124 LSRHVVFDESWFPY 83
           LSRHV+FDES FP+
Sbjct: 673 LSRHVLFDESSFPF 686


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score =  115 bits (287), Expect = 5e-24
 Identities = 49/74 (66%), Positives = 61/74 (82%)
 Frame = -2

Query: 304 LHHTKPNYSFLRIFGCACFPWLRPYTKNKLQSRSKLCVFIGYSLHHKGYKCLDPSTGRIF 125
           LH+  P+Y  LRIFGCACFP LRPYT+NKL  RS  CVF+GYS  +KGY+CL P+TGR++
Sbjct: 678 LHNKSPSYDALRIFGCACFPMLRPYTQNKLDPRSLQCVFLGYSEKYKGYRCLLPATGRVY 737

Query: 124 LSRHVVFDESWFPY 83
           +SRHV+FDES FP+
Sbjct: 738 ISRHVIFDESKFPF 751


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  113 bits (282), Expect = 2e-23
 Identities = 45/74 (60%), Positives = 59/74 (79%)
 Frame = -2

Query: 304  LHHTKPNYSFLRIFGCACFPWLRPYTKNKLQSRSKLCVFIGYSLHHKGYKCLDPSTGRIF 125
            L H  P Y  L+ FGCAC+PWL+PY+++KL  +SK CVF+GYSL+H GY+C DP + R++
Sbjct: 945  LFHASPKYHTLKAFGCACYPWLQPYSRDKLDFKSKQCVFLGYSLNHSGYRCWDPISNRLY 1004

Query: 124  LSRHVVFDESWFPY 83
            +SRHVVFDES FPY
Sbjct: 1005 ISRHVVFDESLFPY 1018


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  112 bits (280), Expect = 3e-23
 Identities = 48/74 (64%), Positives = 62/74 (83%)
 Frame = -2

Query: 304 LHHTKPNYSFLRIFGCACFPWLRPYTKNKLQSRSKLCVFIGYSLHHKGYKCLDPSTGRIF 125
           L + KP+YS LR+FGCAC+P LRPY  +KLQ RSK CVF+G+S HHKG+KCLD S+GR++
Sbjct: 669 LFNQKPDYSSLRVFGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVY 728

Query: 124 LSRHVVFDESWFPY 83
           +SR VVFDE+ FP+
Sbjct: 729 ISRDVVFDENVFPF 742


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score =  110 bits (276), Expect = 9e-23
 Identities = 47/70 (67%), Positives = 59/70 (84%)
 Frame = -2

Query: 292 KPNYSFLRIFGCACFPWLRPYTKNKLQSRSKLCVFIGYSLHHKGYKCLDPSTGRIFLSRH 113
           KP+Y+ LR+FGCAC+P LRPY K+KLQ RS  C F+GYS  HKG+KCLDPSTGR+++SR 
Sbjct: 671 KPDYNALRVFGCACWPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRD 730

Query: 112 VVFDESWFPY 83
           VVFDE+ FP+
Sbjct: 731 VVFDETQFPF 740