BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029383
         (1158 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167350.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...   350   5e-94
ref|XP_004150410.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...   350   5e-94
ref|XP_003631607.1| PREDICTED: SWI/SNF complex subunit SWI3D-lik...   348   1e-93
ref|XP_002509474.1| Transcription regulatory protein SWI3, putat...   338   2e-90
ref|XP_002869146.1| hypothetical protein ARALYDRAFT_491219 [Arab...   337   3e-90

>ref|XP_004167350.1| PREDICTED: SWI/SNF complex subunit SWI3D-like, partial [Cucumis
            sativus]
          Length = 835

 Score =  350 bits (897), Expect = 5e-94
 Identities = 195/364 (53%), Positives = 233/364 (64%), Gaps = 14/364 (3%)
 Frame = +1

Query: 109  RKRGSGVKRKANA----STSSAP-KRQTRGKSSTPLPHIHHNHNGPVTRARQSPNKXXXX 273
            R+R    KRKA+A    +T SAP KR TR KS+   P    NHNGP TRAR  PN     
Sbjct: 27   RRRAGAHKRKASALGASNTLSAPSKRVTRDKSALSHPP---NHNGPFTRARLGPNNVAGA 83

Query: 274  XXXXXXXXXXXXXXXXXXXXXXXFHDKPIEPMFLLQPTPPVIGEVTTASREVIAANE--- 444
                                        + P  +      +  EV      + AA E   
Sbjct: 84   ASAGG-----------------------LAPGSVKADGSLLHSEVQRGDALLSAAEELNK 120

Query: 445  -DQITPLEPEIDAEFEAIRSRDPNVHVVPTPSAWFSWTKIHPIEERALPSFFNGKPENRT 621
              ++  LE   + ++EAI+SR  NVHVVP    WFSWTK+HPIEER L +FF+GK  NR+
Sbjct: 121  ATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWFSWTKVHPIEERTLSTFFSGKAANRS 180

Query: 622  SDIYMEIRNSIMKKFHTDPKTQIEAKDLAELAIGELDARKEVMEFLDHWGLINFHPFPVV 801
             DIY+EIRN IMKKFH +P TQIE+KDL+EL +GELDAR+EVMEFL+HWGLINFHPFP  
Sbjct: 181  PDIYIEIRNWIMKKFHANPSTQIESKDLSELEVGELDARQEVMEFLEHWGLINFHPFPAT 240

Query: 802  DS----DKAETTKTASLIDKLYRFEVAVSRPQKRPKVDMSTQAAPPRLFPESAIADE-VR 966
            DS    D  +  +  SL++KL+ FE   S P   PK++ +T AAPPRL  ES I++E VR
Sbjct: 241  DSISTNDVNDENQKDSLVEKLFHFETLESCPSVVPKIN-ATTAAPPRLLRESTISEEIVR 299

Query: 967  PEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECYNNGKFDSGMSPADFILMEPAEVP 1146
            PEGPSVEYHCNSCSADCSRKRYHCQK+ADFDLCSEC+NNGKFDS MS +DFILME A VP
Sbjct: 300  PEGPSVEYHCNSCSADCSRKRYHCQKRADFDLCSECFNNGKFDSDMSSSDFILMESAGVP 359

Query: 1147 GVSG 1158
            G SG
Sbjct: 360  GASG 363


>ref|XP_004150410.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Cucumis sativus]
          Length = 1024

 Score =  350 bits (897), Expect = 5e-94
 Identities = 195/364 (53%), Positives = 233/364 (64%), Gaps = 14/364 (3%)
 Frame = +1

Query: 109  RKRGSGVKRKANA----STSSAP-KRQTRGKSSTPLPHIHHNHNGPVTRARQSPNKXXXX 273
            R+R    KRKA+A    +T SAP KR TR KS+   P    NHNGP TRAR  PN     
Sbjct: 27   RRRAGAHKRKASALGASNTLSAPSKRVTRDKSALSHPP---NHNGPFTRARLGPNNVAGA 83

Query: 274  XXXXXXXXXXXXXXXXXXXXXXXFHDKPIEPMFLLQPTPPVIGEVTTASREVIAANE--- 444
                                        + P  +      +  EV      + AA E   
Sbjct: 84   ASAGG-----------------------LAPGSVKADGSLLHSEVQRGDALLSAAEELNK 120

Query: 445  -DQITPLEPEIDAEFEAIRSRDPNVHVVPTPSAWFSWTKIHPIEERALPSFFNGKPENRT 621
              ++  LE   + ++EAI+SR  NVHVVP    WFSWTK+HPIEER L +FF+GK  NR+
Sbjct: 121  ATRLANLEASFEVDYEAIKSRGANVHVVPNHCGWFSWTKVHPIEERTLSTFFSGKAANRS 180

Query: 622  SDIYMEIRNSIMKKFHTDPKTQIEAKDLAELAIGELDARKEVMEFLDHWGLINFHPFPVV 801
             DIY+EIRN IMKKFH +P TQIE+KDL+EL +GELDAR+EVMEFL+HWGLINFHPFP  
Sbjct: 181  PDIYIEIRNWIMKKFHANPSTQIESKDLSELEVGELDARQEVMEFLEHWGLINFHPFPAT 240

Query: 802  DS----DKAETTKTASLIDKLYRFEVAVSRPQKRPKVDMSTQAAPPRLFPESAIADE-VR 966
            DS    D  +  +  SL++KL+ FE   S P   PK++ +T AAPPRL  ES I++E VR
Sbjct: 241  DSISTNDVNDENQKDSLVEKLFHFETLESCPSVVPKIN-ATTAAPPRLLRESTISEEIVR 299

Query: 967  PEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECYNNGKFDSGMSPADFILMEPAEVP 1146
            PEGPSVEYHCNSCSADCSRKRYHCQK+ADFDLCSEC+NNGKFDS MS +DFILME A VP
Sbjct: 300  PEGPSVEYHCNSCSADCSRKRYHCQKRADFDLCSECFNNGKFDSDMSSSDFILMESAGVP 359

Query: 1147 GVSG 1158
            G SG
Sbjct: 360  GASG 363


>ref|XP_003631607.1| PREDICTED: SWI/SNF complex subunit SWI3D-like [Vitis vinifera]
          Length = 1012

 Score =  348 bits (893), Expect = 1e-93
 Identities = 191/360 (53%), Positives = 228/360 (63%), Gaps = 10/360 (2%)
 Frame = +1

Query: 109  RKRGSGVKRKAN---ASTSSAPKRQTRGKS-STPLPHIHHNHNGPVTRARQSPNKXXXXX 276
            R+R  G KRK+N   AS S+  KR  R K+ + PL  IH   NGP TRARQSPN      
Sbjct: 38   RRRAGGQKRKSNNLSASNSTPSKRLAREKALAPPLASIH---NGPCTRARQSPNNVSSAA 94

Query: 277  XXXXXXXXXXXXXXXXXXXXXXFHDKPIEPMFLLQPTPPVIGEVTTASREVIAANEDQIT 456
                                    D+P       +  P         + E +    +   
Sbjct: 95   AATAAASGALQKL-----------DQP-------EAAPGASSSGAGLTAEELNVKNEDWE 136

Query: 457  PLEPEIDAEFEAIRSRDPNVHVVPTPSAWFSWTKIHPIEERALPSFFNGKPENRTSDIYM 636
             LE E+ AEFEAIRSRD NVHVVP+ S WFSWTK+HP+E +A+PSFFNGK ENR  D+Y 
Sbjct: 137  ALEAEMAAEFEAIRSRDANVHVVPSSSGWFSWTKVHPLEAQAMPSFFNGKSENRNPDMYK 196

Query: 637  EIRNSIMKKFHTDPKTQIEAKDLAELAIGELDARKEVMEFLDHWGLINFHPF-----PVV 801
            +IR+ I+K+FH +P TQIE KDL+EL IG+LDAR+EVMEFLD+WGLINFHPF      V 
Sbjct: 197  QIRDWIIKRFHGNPNTQIEVKDLSELEIGDLDARQEVMEFLDYWGLINFHPFLPAESSVA 256

Query: 802  DSDKAETTKTASLIDKLYRFEVAVSRPQKRPKVDMSTQAAPPRLFPESAIADE-VRPEGP 978
            + D     +  S ++KLYRF++  S P   PK +MS       LFPESA  +E VR EGP
Sbjct: 257  NGDDDTAKQLDSSVEKLYRFDMVQSCPPVVPKANMSAPTMASGLFPESAFVEELVRSEGP 316

Query: 979  SVEYHCNSCSADCSRKRYHCQKQADFDLCSECYNNGKFDSGMSPADFILMEPAEVPGVSG 1158
            SVEYHCNSCSADCSRKRYHCQKQADFDLC+EC+NN KF S MS +DFILMEPAE PGVSG
Sbjct: 317  SVEYHCNSCSADCSRKRYHCQKQADFDLCTECFNNQKFGSDMSSSDFILMEPAEAPGVSG 376


>ref|XP_002509474.1| Transcription regulatory protein SWI3, putative [Ricinus communis]
            gi|223549373|gb|EEF50861.1| Transcription regulatory
            protein SWI3, putative [Ricinus communis]
          Length = 983

 Score =  338 bits (867), Expect = 2e-90
 Identities = 189/369 (51%), Positives = 233/369 (63%), Gaps = 19/369 (5%)
 Frame = +1

Query: 109  RKRGSGVKRKANA-STSSAP----KRQTRGKSSTPLPHIHHNHNGPVTRARQSPNKXXXX 273
            R+R SG KRKANA STS+A     KR TR K++     +H+   GP+TRARQSPN     
Sbjct: 28   RRRASGQKRKANALSTSNASSTPSKRLTREKAAISQIPVHNG--GPLTRARQSPNNLGST 85

Query: 274  XXXXXXXXXXXXXXXXXXXXXXXFHDKPIEPMFLLQPTPPVIGEVTTASREVIAANEDQI 453
                                                     +  VT      IAA E+++
Sbjct: 86   AAGGGIKVEEK------------------------------VAAVTATEAATIAALEEEV 115

Query: 454  TPLEP---EIDAEFEAIRSRDPNVHVVPTPSAWFSWTKIHPIEERALPSFFNGKPENRTS 624
            + LE     I+AEFE IRSRD N HVVP    WFSW KIHP+EERALPSFFNGK + RT 
Sbjct: 116  SKLEELKGGIEAEFEVIRSRDSNAHVVPHHCGWFSWPKIHPLEERALPSFFNGKSKIRTP 175

Query: 625  DIYMEIRNSIMKKFHTDPKTQIEAKDLAELAIGELDARKEVMEFLDHWGLINFHPFPVVD 804
            DIYMEIRN I+K+FH +P  QIE KDL+EL + ++DA++EV+EFLD+WGLINFHPFP  D
Sbjct: 176  DIYMEIRNWIVKRFHLNPNVQIELKDLSELDVADVDAKQEVLEFLDYWGLINFHPFPQTD 235

Query: 805  S----DKAETTKTASLIDKLYRFEV------AVSRPQKRPKVDMSTQAAPPRLFPESAIA 954
            S    D    ++   L++KL+ FE        +SRP      ++S+ A P   FP+S+IA
Sbjct: 236  SPANADGGGRSEKELLLEKLFHFETIQPCLPVISRP------NVSSPALPSGFFPDSSIA 289

Query: 955  DE-VRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECYNNGKFDSGMSPADFILME 1131
            DE VRPEGP+VEYHCNSCSADCSRKRYHCQ QAD+DLC++C+NNGKF S MS +DFILME
Sbjct: 290  DELVRPEGPAVEYHCNSCSADCSRKRYHCQTQADYDLCADCFNNGKFGSDMSSSDFILME 349

Query: 1132 PAEVPGVSG 1158
            PAE PG+SG
Sbjct: 350  PAEAPGISG 358


>ref|XP_002869146.1| hypothetical protein ARALYDRAFT_491219 [Arabidopsis lyrata subsp.
            lyrata] gi|297314982|gb|EFH45405.1| hypothetical protein
            ARALYDRAFT_491219 [Arabidopsis lyrata subsp. lyrata]
          Length = 983

 Score =  337 bits (864), Expect = 3e-90
 Identities = 184/359 (51%), Positives = 225/359 (62%), Gaps = 11/359 (3%)
 Frame = +1

Query: 109  RKRGSGVKRKANAS-----TSSAPKRQTRGKSSTPLPHIHHNHNGPVTRARQSPNKXXXX 273
            R+RG G+KRKANA      +SS P ++   +    L      HNGP+TRARQ+P+     
Sbjct: 31   RRRGGGLKRKANALGGSNFSSSTPSKRMLTREKAMLASFSPVHNGPLTRARQAPSIMPSA 90

Query: 274  XXXXXXXXXXXXXXXXXXXXXXXFHDKPIEPMFLLQPTPPVIGEVTTASREVIAANEDQI 453
                                     +KP E             E   A RE  A      
Sbjct: 91   ADGVKSELLNVAVGADG--------EKPKEEE-----------ERNKAIREWEA------ 125

Query: 454  TPLEPEIDAEFEAIRSRDPNVHVVPTPSAWFSWTKIHPIEERALPSFFNGKPENRTSDIY 633
              LE +I+A+FEAIRSRD NVHVVP    WFSW KIHP+EER+LPSFFNGK E RTS++Y
Sbjct: 126  --LEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVY 183

Query: 634  MEIRNSIMKKFHTDPKTQIEAKDLAELAIGELDARKEVMEFLDHWGLINFHPFPVVD--- 804
             EIRN IM+KFH++P  QIE KDL EL +G+ +A++EVMEFLD+WGLINFHPFP  D   
Sbjct: 184  REIRNWIMRKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDAGS 243

Query: 805  --SDKAETTKTASLIDKLYRFEVAVSRPQKRPKVDMSTQAAPPRLFPESAIADE-VRPEG 975
              SD  +     SL++ LYRF+V  + P   PK  ++ QA P  LFP+    DE ++ EG
Sbjct: 244  TPSDHDDLGDKESLLNSLYRFQVDEACPPLVPKPRLTAQATPSGLFPDPVATDELLKQEG 303

Query: 976  PSVEYHCNSCSADCSRKRYHCQKQADFDLCSECYNNGKFDSGMSPADFILMEPAEVPGV 1152
            P+VEYHCNSCSADCSRKRYHC KQADFDLC+EC+N+GKF S MSP+DFILMEPAE PGV
Sbjct: 304  PAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMSPSDFILMEPAEAPGV 362