BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029379
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi...   238   5e-61
emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]   237   8e-61
ref|XP_002532248.1| pentatricopeptide repeat-containing protein,...   229   2e-58
ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containi...   222   3e-56
ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containi...   201   7e-50

>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  238 bits (606), Expect = 5e-61
 Identities = 112/156 (71%), Positives = 136/156 (87%)
 Frame = +1

Query: 22  GGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSVG 201
           G KVDRA KI++FM+KNGC PN+FNYSALMNGF K+GRLEEAKE+F+EM+S GL+ D+VG
Sbjct: 285 GEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVG 344

Query: 202 YTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERLP 381
           YTTLI+  CR G+VDEA++ LK+M+E +C+AD V FNVILGGLCREGRFEEA GMLERLP
Sbjct: 345 YTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLP 404

Query: 382 YEGVHLNKASYRIVLNFLLKENEIERAVYLLSLMLG 489
           YEGV+LNKASYRIVLN L +E E+++A  L+ LMLG
Sbjct: 405 YEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLG 440



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
 Frame = +1

Query: 16  LRGGKVDRARKIIDFMRKN-GCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLE-A 189
           +   +VD  RK +   +K+   +PN   ++ L+    K+G ++ A E+  EM+ S +   
Sbjct: 175 VESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYP 234

Query: 190 DSVGYTTLISCLCRGGKVDEAIDFLKEMKEK-ECKADCVPFNVILGGLCREGRFEEAMGM 366
           + + Y+TLI+ LC  G++ EAI+  +EM  K +   D + +N ++ G C   + + A+ +
Sbjct: 235 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKI 294

Query: 367 LERLPYEGVHLNKASYRIVLNFLLKENEIERA 462
           +E +   G + N  +Y  ++N   KE  +E A
Sbjct: 295 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEA 326



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 37/152 (24%), Positives = 75/152 (49%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSV 198
           R G+VD A +++  MR+N C+ +   ++ ++ G  ++GR EEA+ +   +   G+  +  
Sbjct: 354 RAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKA 413

Query: 199 GYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERL 378
            Y  +++ LCR G++ +A   +  M  +         N +L  LC  G+  +A+  L  L
Sbjct: 414 SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGL 473

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERAVYLL 474
              G      S+ +++  + +E ++  A  LL
Sbjct: 474 LELGFKPEPNSWALLVELICRERKLLPAFELL 505


>emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  237 bits (604), Expect = 8e-61
 Identities = 112/156 (71%), Positives = 135/156 (86%)
 Frame = +1

Query: 22  GGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSVG 201
           G KVDRA KI++FM+KNGC PN+FNYSALMNGF K+GRLEEAKE+F+EM+S GL+ D+VG
Sbjct: 328 GXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVG 387

Query: 202 YTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERLP 381
           YTTLI+  CR G+VDEA++ LK+M E +C+AD V FNVILGGLCREGRFEEA GMLERLP
Sbjct: 388 YTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLP 447

Query: 382 YEGVHLNKASYRIVLNFLLKENEIERAVYLLSLMLG 489
           YEGV+LNKASYRIVLN L +E E+++A  L+ LMLG
Sbjct: 448 YEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLG 483



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 36/152 (23%), Positives = 73/152 (48%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSV 198
           R G+VD A +++  M +N C+ +   ++ ++ G  ++GR EEA  +   +   G+  +  
Sbjct: 397 RAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYEGVYLNKA 456

Query: 199 GYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERL 378
            Y  +++ LCR G++ +A   +  M  +         N +L  LC  G+  +A+  L  L
Sbjct: 457 SYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGL 516

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERAVYLL 474
              G      S+ +++  + +E ++  A  LL
Sbjct: 517 LELGFKPEPNSWALLVELICRERKLLPAFELL 548


>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 521

 Score =  229 bits (583), Expect = 2e-58
 Identities = 107/155 (69%), Positives = 131/155 (84%)
 Frame = +1

Query: 22  GGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSVG 201
           GGK DRARKI++FMR NGC PN+FNYS LMNGF K+GRLEEAKE+F+EM+SSGL+ D+VG
Sbjct: 284 GGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVG 343

Query: 202 YTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERLP 381
           YTTLI+C C  G++DEA++ LKEM E +CKAD V FNV+L GLCREGRF+EA+ MLE L 
Sbjct: 344 YTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLA 403

Query: 382 YEGVHLNKASYRIVLNFLLKENEIERAVYLLSLML 486
           YEGV+LNK SYRIVLNFL ++ E+E++  LL LML
Sbjct: 404 YEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLML 438



 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNG-CQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSG-LEAD 192
           + G ++ A +++  M+K+    PN+  YS L++G   +GRL+EA E+F EM S   +  D
Sbjct: 211 KSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPD 270

Query: 193 SVGYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLE 372
           ++ Y+ LI   C GGK D A   ++ M+   C  +   ++V++ G C+EGR EEA  + +
Sbjct: 271 ALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFD 330

Query: 373 RLPYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLM 483
            +   G+  +   Y  ++N       I+ A+ LL  M
Sbjct: 331 EMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEM 367



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
 Frame = +1

Query: 28  KVDRARKIIDFMRKN-GCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSV-G 201
           ++D A+K + ++ ++   +PN   ++ L+    K G LE A E+ +EM+ S     +V  
Sbjct: 178 QIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVIT 237

Query: 202 YTTLISCLCRGGKVDEAIDFLKEMKEK-ECKADCVPFNVILGGLCREGRFEEAMGMLERL 378
           Y+TLI  LC  G++ EAI+  +EM  K +   D + ++V++ G C  G+ + A  ++E +
Sbjct: 238 YSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFM 297

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERA 462
              G   N  +Y +++N   KE  +E A
Sbjct: 298 RSNGCDPNVFNYSVLMNGFCKEGRLEEA 325



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/143 (20%), Positives = 68/143 (47%)
 Frame = +1

Query: 25  GKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSVGY 204
           G++D A +++  M +  C+ +   ++ L+ G  ++GR +EA  +   +   G+  +   Y
Sbjct: 355 GRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSY 414

Query: 205 TTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERLPY 384
             +++ LC+ G+++++   L  M  +         N +L  LC  G  + A+  L  L  
Sbjct: 415 RIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQ 474

Query: 385 EGVHLNKASYRIVLNFLLKENEI 453
            G      S+  ++ ++ +E ++
Sbjct: 475 MGFTPEPKSWAHLIEYICRERKL 497


>ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
           gi|449497032|ref|XP_004160294.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score =  222 bits (565), Expect = 3e-56
 Identities = 98/154 (63%), Positives = 132/154 (85%)
 Frame = +1

Query: 25  GKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSVGY 204
           GKVDRAR I++FM+ NGC PN+FNYS LMNG+ K+GRL+EAKE+FNE++S G++ D++ Y
Sbjct: 276 GKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISY 335

Query: 205 TTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERLPY 384
           TTLI+CLCR G+VDEA + L++MK+K+C+AD V FNV+LGGLCREGRF+EA+ M+++LP+
Sbjct: 336 TTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPF 395

Query: 385 EGVHLNKASYRIVLNFLLKENEIERAVYLLSLML 486
           EG +LNK SYRIVLNFL ++ E+ +A  LL LML
Sbjct: 396 EGFYLNKGSYRIVLNFLTQKGELRKATELLGLML 429



 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQ-PNIFNYSALMNGFSKDGRLEEAKEIFNEMRSS-GLEAD 192
           R G +  A +++  M+      PN+  YS L+ G  ++G+L+EA E F EM S   +  D
Sbjct: 202 RNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPD 261

Query: 193 SVGYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLE 372
           ++ Y  LI+  C+ GKVD A   L+ MK   C  +   ++V++ G C+EGR +EA  +  
Sbjct: 262 ALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFN 321

Query: 373 RLPYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLM 483
            +   G+  +  SY  ++N L +   ++ A  LL  M
Sbjct: 322 EIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQM 358



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 48/148 (32%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
 Frame = +1

Query: 28  KVDRARKIIDFMR-KNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLE-ADSVG 201
           +VD ARK++   R K   +PN   ++ L+    ++G L+ A E+  EM+S+ +   + V 
Sbjct: 169 RVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVT 228

Query: 202 YTTLISCLCRGGKVDEAIDFLKEMKEKE-CKADCVPFNVILGGLCREGRFEEAMGMLERL 378
           Y+TLI  LC  GK+ EAI+F +EM  K+    D + +N+++ G C+ G+ + A  +LE +
Sbjct: 229 YSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFM 288

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERA 462
              G   N  +Y +++N   KE  ++ A
Sbjct: 289 KSNGCSPNVFNYSVLMNGYCKEGRLQEA 316



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
 Frame = +1

Query: 79  QPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSS-GLEADSVGYTTLISCLCRGGKVDEAI 255
           +P++   S  +N   +  R++ A+++    RS   L  ++  +  L+   CR G +  A 
Sbjct: 151 KPSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAF 210

Query: 256 DFLKEMKEKECK-ADCVPFNVILGGLCREGRFEEAMGMLERL-PYEGVHLNKASYRIVLN 429
           + +KEMK       + V ++ ++GGLC  G+ +EA+   E +   + +  +  +Y I++N
Sbjct: 211 EVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILIN 270

Query: 430 FLLKENEIERAVYLLSLM 483
              +  +++RA  +L  M
Sbjct: 271 GFCQRGKVDRARTILEFM 288


>ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  201 bits (510), Expect = 7e-50
 Identities = 96/156 (61%), Positives = 125/156 (80%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSV 198
           RGGK DRAR +I FM+ NGC PN++NYSAL++G  K G+LE+AK +  E++ SGL+ D+V
Sbjct: 317 RGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAV 376

Query: 199 GYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERL 378
            YT+LI+ LCR GK DEAI+ L+EMKE  C+AD V FNV+LGGLCREG+FEEA+ M+E+L
Sbjct: 377 TYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKL 436

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLML 486
           P +GV+LNK SYRIVLN L ++ E++RA  LL LML
Sbjct: 437 PQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLML 472



 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQ-PNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSG-LEAD 192
           + G +D A +I++ MR +    PN+  YS LM+G  ++GR++EA ++F EM S   +  D
Sbjct: 245 KNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPD 304

Query: 193 SVGYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLE 372
            + Y  LI+  CRGGK D A + ++ MK   C  +   ++ ++ GLC+ G+ E+A G+L 
Sbjct: 305 PLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLA 364

Query: 373 RLPYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLM 483
            +   G+  +  +Y  ++NFL +  + + A+ LL  M
Sbjct: 365 EIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEM 401



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
 Frame = +1

Query: 16  LRGGKVDRARKII-----DFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSG 180
           L   +VD ARK++     D  RK    PN+  ++ L+    K+G L+ A EI  EMR+S 
Sbjct: 208 LDSNRVDLARKLLLHAKRDLTRK----PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSE 263

Query: 181 LEADS-VGYTTLISCLCRGGKVDEAIDFLKEMKEKE-CKADCVPFNVILGGLCREGRFEE 354
               + V Y+TL+  LCR G+V EA D  +EM  ++    D + +NV++ G CR G+ + 
Sbjct: 264 FSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDR 323

Query: 355 AMGMLERLPYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLMLG 489
           A  +++ +   G + N  +Y  +++ L K  ++E A  +L+ + G
Sbjct: 324 ARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKG 368



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/155 (21%), Positives = 78/155 (50%)
 Frame = +1

Query: 19  RGGKVDRARKIIDFMRKNGCQPNIFNYSALMNGFSKDGRLEEAKEIFNEMRSSGLEADSV 198
           R GK D A ++++ M++NGCQ +   ++ L+ G  ++G+ EEA ++  ++   G+  +  
Sbjct: 387 RNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKG 446

Query: 199 GYTTLISCLCRGGKVDEAIDFLKEMKEKECKADCVPFNVILGGLCREGRFEEAMGMLERL 378
            Y  +++ L +  ++  A + L  M  +  +      N +L  LC+ G  ++A   L  L
Sbjct: 447 SYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDL 506

Query: 379 PYEGVHLNKASYRIVLNFLLKENEIERAVYLLSLM 483
              G      ++ +++  + +E ++   +Y+  L+
Sbjct: 507 VEMGFQPGLETWEVLIGLICRERKL---LYVFELL 538