BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029193
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retr...    56   3e-08
emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera]    58   7e-08
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               60   1e-07
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]                     55   2e-07
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]                     55   3e-07

>gb|AAD14478.1| Strong similarity to gb|AF039376 Evelknievel retrotransposon
           polyprotein from Arabidopsis arenosa [Arabidopsis
           thaliana]
          Length = 1194

 Score = 56.2 bits (134), Expect(2) = 3e-08
 Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 146 FQLLD-KVGMMLFQGPINDGLYIFPSSTTQAKPSSSPAFTSQRTSSNIWHQRLGHPSVAI 322
           FQ+ D K G+ L QG   D LY +P      KPSS    T+ +T    WH RLGHPS++ 
Sbjct: 378 FQVKDLKTGVQLLQGRTKDELYEWP--VNPPKPSSHFTTTTPKTDLTSWHSRLGHPSLST 435

Query: 323 FRKVLMKHNLPVEN 364
            + V+ + +LPV N
Sbjct: 436 LKVVVSQFSLPVSN 449



 Score = 26.2 bits (56), Expect(2) = 3e-08
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 22  ADHHLPRFDQNQYMGWRYKDFQDRWLGDGQLLNIENKGNGILPTP 156
           A HH+     N  +   Y   +D  + DG  L+I + G+ ++ TP
Sbjct: 294 ATHHITSDLNNLSLHQPYTGGEDVTIADGSGLSISHTGSALISTP 338


>emb|CAN64509.1| hypothetical protein VITISV_041217 [Vitis vinifera]
          Length = 1269

 Score = 58.2 bits (139), Expect(2) = 7e-08
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +2

Query: 179 FQGPINDGLYIFPSSTTQAKPSSSPAFTSQRTSSNIWHQRLGHPSVAIFRKVLMKHNLPV 358
           F G   DG+Y +P STTQ++P    AF+S +T+ + WH RLGHPS++IF+ ++   +L V
Sbjct: 414 FHGRTKDGVYEWPLSTTQSRPLI--AFSSVKTTLSEWHHRLGHPSLSIFKNIMSSFHLDV 471



 Score = 23.1 bits (48), Expect(2) = 7e-08
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 22  ADHHLPRFDQNQYMGWRYKDFQDRWLGDGQLLNIENKGNGILPTP 156
           A HH+     N  +   +    +  +GDG  L I + G+  L TP
Sbjct: 330 ASHHVTTDLHNLALHXPFDGTDEIMIGDGSGLPISHXGSTSLTTP 374


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/75 (42%), Positives = 40/75 (53%)
 Frame = +2

Query: 161 KVGMMLFQGPINDGLYIFPSSTTQAKPSSSPAFTSQRTSSNIWHQRLGHPSVAIFRKVLM 340
           K G ML+ G   +GLY F   +  +K SSS A+ S R S+  WH RLGH S  I  KVL 
Sbjct: 445 KTGKMLYHGKSENGLYPFRFPSKTSKVSSSLAYVSSRVSAETWHSRLGHASSTIVSKVLS 504

Query: 341 KHNLPVENKTCTIFC 385
              +PV   +   FC
Sbjct: 505 NKAVPVLGSSNFSFC 519


>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 55.1 bits (131), Expect(2) = 2e-07
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 146 FQLLD-KVGMMLFQGPINDGLYIFPSSTTQAKPSSSPAFTSQRTSSNIWHQRLGHPSVAI 322
           FQ+ D   G+ L QG   D LY +P +++QA   S  A    + + + WH RLGHPS+AI
Sbjct: 419 FQVKDLNTGVPLLQGKTKDELYEWPIASSQAV--SMFASPCSKATHSSWHSRLGHPSLAI 476

Query: 323 FRKVLMKHNLPVEN 364
              V+  H+LPV N
Sbjct: 477 LNSVISNHSLPVLN 490



 Score = 25.0 bits (53), Expect(2) = 2e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 22  ADHHLPRFDQNQYMGWRYKDFQDRWLGDGQLLNIENKGNGILPTPRQGGD 171
           A HH+     N  +   Y    D  + DG  + I + G+  LPT  +  D
Sbjct: 335 ATHHITSDFNNLSLHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLD 384


>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score = 55.1 bits (131), Expect(2) = 3e-07
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 146 FQLLD-KVGMMLFQGPINDGLYIFPSSTTQAKPSSSPAFTSQRTSSNIWHQRLGHPSVAI 322
           FQ+ D   G+ L QG   D LY +P +++QA   S  A    + + + WH RLGHPS+AI
Sbjct: 419 FQVKDLNTGVPLLQGKTKDELYEWPIASSQAV--SMFASPCSKATHSSWHSRLGHPSLAI 476

Query: 323 FRKVLMKHNLPVEN 364
              V+  H+LPV N
Sbjct: 477 LNSVISNHSLPVLN 490



 Score = 24.3 bits (51), Expect(2) = 3e-07
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +1

Query: 22  ADHHLPRFDQNQYMGWRYKDFQDRWLGDGQLLNIENKGNGILPTPRQGGD 171
           A HH+     N      Y    D  + DG  + I + G+  LPT  +  D
Sbjct: 335 ATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLD 384