BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029188
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33251.3| unnamed protein product [Vitis vinifera]              129   2e-28
emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]   129   2e-28
ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   113   1e-23
ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata] g...   110   1e-22

>emb|CBI33251.3| unnamed protein product [Vitis vinifera]
          Length = 462

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/121 (54%), Positives = 88/121 (72%)
 Frame = +2

Query: 44  IPTPTLSFEPNTEKIKRNLLKKGVFPTPKIVHTLRKKETQKFNRKSKKIADKPLSESQKL 223
           +P PT    PNTEKIKRNL++KGV+PTPKI+HTLRKKE QK  RKSK++A++  S ++  
Sbjct: 3   VPPPTGIPTPNTEKIKRNLIRKGVYPTPKIIHTLRKKEIQKSIRKSKRLANQNQSPTEDE 62

Query: 224 EISEESHFQTVKREYKAITKAFRASNGDKNENLMVGKPWERLERVGLRELASGSKEYGGE 403
           E++EE+HF+T+KREY  ++KA           LMVGKPW   ER G +E+ +GS EYGGE
Sbjct: 63  EVNEEAHFRTLKREYTKLSKA-----------LMVGKPW---ERPGFKEILNGSVEYGGE 108

Query: 404 K 406
           +
Sbjct: 109 R 109


>emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]
          Length = 490

 Score =  129 bits (324), Expect = 2e-28
 Identities = 66/121 (54%), Positives = 88/121 (72%)
 Frame = +2

Query: 44  IPTPTLSFEPNTEKIKRNLLKKGVFPTPKIVHTLRKKETQKFNRKSKKIADKPLSESQKL 223
           +P PT    PNTEKIKRNL++KGV+PTPKI+HTLRKKE QK  RKSK++A++  S ++  
Sbjct: 3   VPPPTGIPTPNTEKIKRNLIRKGVYPTPKIIHTLRKKEIQKSIRKSKRLANQNQSPTEDE 62

Query: 224 EISEESHFQTVKREYKAITKAFRASNGDKNENLMVGKPWERLERVGLRELASGSKEYGGE 403
           E++EE+HF+T+KREY  ++KA           LMVGKPW   ER G +E+ +GS EYGGE
Sbjct: 63  EVNEEAHFRTLKREYTKLSKA-----------LMVGKPW---ERPGFKEILNGSVEYGGE 108

Query: 404 K 406
           +
Sbjct: 109 R 109


>ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
           chloroplastic-like [Cucumis sativus]
           gi|449499902|ref|XP_004160949.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g67570,
           chloroplastic-like [Cucumis sativus]
          Length = 860

 Score =  129 bits (323), Expect = 3e-28
 Identities = 68/123 (55%), Positives = 90/123 (73%), Gaps = 6/123 (4%)
 Frame = +2

Query: 23  AMEASTRIPTPTLSFEPNTEKIKRNLLKKGVFPTPKIVHTLRKKETQKFNRKSKKIADK- 199
           A+ ++T IP+P   FEP+T+KIKR LL+KGV+PTP+IV +LRKKE QK+NRK K++A++ 
Sbjct: 3   ALNSNTPIPSP--KFEPDTDKIKRMLLQKGVYPTPRIVRSLRKKEIQKYNRKLKRVAERQ 60

Query: 200 -----PLSESQKLEISEESHFQTVKREYKAITKAFRASNGDKNENLMVGKPWERLERVGL 364
                PLSESQK  I+EE+HF T++ EYK  +KA  A        LMVG+PWERLERV  
Sbjct: 61  SAQSPPLSESQKQLIAEETHFLTLRSEYKEFSKAIEAKPAG---GLMVGRPWERLERVNF 117

Query: 365 REL 373
           +EL
Sbjct: 118 KEL 120


>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509586|gb|AES90728.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  113 bits (283), Expect = 1e-23
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
 Frame = +2

Query: 53  PTLSFEPNTEKIKRNLLKKGVFPTPKIVHTLRKKETQKFNRK--SKKIADKPLSESQKLE 226
           P   F+P+T+KI+R+L++KGV PTPKI+HTLRKK+ QK NRK   +   + PLS+SQK  
Sbjct: 16  PLSQFQPDTDKIRRSLIQKGVTPTPKIIHTLRKKQIQKHNRKLNRQNQLNPPLSKSQKQT 75

Query: 227 ISEESHFQTVKREYKAITKAFRASNGDKNENLMVGKPWERLERVGLRELASGSKEYGGEK 406
           + EE HFQ +K EYK  T+    + G      ++GKPWE +E+V   E    + E+ GEK
Sbjct: 76  LEEEQHFQELKHEYKQFTQNLEENQGGNKGLCLIGKPWEGVEKVDFLERIKVNYEHRGEK 135


>ref|XP_002866697.1| EMB1408 [Arabidopsis lyrata subsp. lyrata]
           gi|297312532|gb|EFH42956.1| EMB1408 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 621

 Score =  110 bits (275), Expect = 1e-22
 Identities = 62/131 (47%), Positives = 86/131 (65%), Gaps = 6/131 (4%)
 Frame = +2

Query: 29  EASTRIPTPTLSFEPNTEKIKRNLLKKGVFPTPKIVHTLRKKETQKFNRKSKKIAD---K 199
           ++  R+P     FEP+ EKIKR LLK GV PTPKI++ LRKKE QK NR++K+  +   +
Sbjct: 10  QSPARVPP---EFEPDMEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAE 66

Query: 200 PLSESQKLEISEESHFQTVKREYKAITKAFRASNGDKNENLMVGKPWERLERVGLRELAS 379
             +E+QK  + EE+ FQT++REYK  T++    +G  +  LMVG PWE +ERV L+EL S
Sbjct: 67  VYTEAQKQSMEEEARFQTLRREYKQFTRSISGKSGG-DVGLMVGNPWEGIERVKLKELVS 125

Query: 380 GSKE---YGGE 403
           G +     GGE
Sbjct: 126 GVRREEVSGGE 136