BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029165
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003571216.1| PREDICTED: non-structural maintenance of chr...    63   3e-08
dbj|BAK00318.1| predicted protein [Hordeum vulgare subsp. vulgare]     63   4e-08
emb|CBI30028.3| unnamed protein product [Vitis vinifera]               62   9e-08
ref|XP_002279026.1| PREDICTED: non-structural maintenance of chr...    62   9e-08
ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [A...    57   2e-06

>ref|XP_003571216.1| PREDICTED: non-structural maintenance of chromosome element 4-like
           [Brachypodium distachyon]
          Length = 361

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 4/101 (3%)
 Frame = -3

Query: 297 ADPFQRREGVEESTVGN---QNVADHRNLRLSYLDLKDSIMRE-GQIVKEDFGELIEKIT 130
           A P    EG  ++  G    Q +A+ R LR  YL +K+ I  E   + KED  +    IT
Sbjct: 2   AAPAAGAEGPGDADGGGPRQQGLAERRMLRSRYLAMKNLISEEKDDLAKEDSDKFTSIIT 61

Query: 129 KVERLYQQVQRPREQITDAETLLKITHSLCSYLKSYENSEG 7
           +VE L++ VQRPREQI DAE LL IT +L   ++S ++SEG
Sbjct: 62  QVESLHELVQRPREQIADAEALLDITTTLVKSVRS-QSSEG 101


>dbj|BAK00318.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 359

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
 Frame = -3

Query: 246 QNVADHRNLRLSYLDLKDSIMRE-GQIVKEDFGELIEKITKVERLYQQVQRPREQITDAE 70
           Q +A+ R LR  YL +K  I  E   + KED  +    IT+VE L++QVQRPREQ+ DAE
Sbjct: 21  QGLAERRMLRSQYLAMKSLINEEKDDMAKEDSDKFASIITQVESLHEQVQRPREQVADAE 80

Query: 69  TLLKITHSLCSYLKSYENSEG 7
            LL IT +    ++S ++SEG
Sbjct: 81  ALLDITTTFVKSVRS-QSSEG 100


>emb|CBI30028.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = -3

Query: 252 GNQNVADHRNLRLSYLDLKDSIM--REGQIVKEDFGELIEKITKVERLYQQVQRPREQIT 79
           G+Q V + R LR  YL +K+ I   RE  I K D  +    I +VE L+QQVQ+PREQ+ 
Sbjct: 98  GHQGVTERRVLRSRYLAVKNQICDGRE-DITKVDSDKFKSIINEVESLHQQVQKPREQVA 156

Query: 78  DAETLLKITHSLCSYLKSYEN 16
           DAE LL IT++L + +K++ N
Sbjct: 157 DAEALLDITNTLVTSVKAHGN 177


>ref|XP_002279026.1| PREDICTED: non-structural maintenance of chromosome element 4
           [Vitis vinifera]
          Length = 380

 Score = 61.6 bits (148), Expect = 9e-08
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
 Frame = -3

Query: 252 GNQNVADHRNLRLSYLDLKDSIM--REGQIVKEDFGELIEKITKVERLYQQVQRPREQIT 79
           G+Q V + R LR  YL +K+ I   RE  I K D  +    I +VE L+QQVQ+PREQ+ 
Sbjct: 26  GHQGVTERRVLRSRYLAVKNQICDGRE-DITKVDSDKFKSIINEVESLHQQVQKPREQVA 84

Query: 78  DAETLLKITHSLCSYLKSYEN 16
           DAE LL IT++L + +K++ N
Sbjct: 85  DAEALLDITNTLVTSVKAHGN 105


>ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana]
           gi|12320790|gb|AAG50545.1|AC079828_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|28393397|gb|AAO42122.1| unknown protein [Arabidopsis
           thaliana] gi|29824223|gb|AAP04072.1| unknown protein
           [Arabidopsis thaliana] gi|332194504|gb|AEE32625.1| Nse4,
           component of Smc5/6 DNA repair complex [Arabidopsis
           thaliana]
          Length = 403

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -3

Query: 246 QNVADHRNLRLSYLDLKDSIMR-EGQIVKEDFGELIEKITKVERLYQQVQRPREQITDAE 70
           Q ++D R LR  YL L++ I   +  ++K D  +    I  VE L+QQV++PREQI DAE
Sbjct: 54  QGISDRRILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAE 113

Query: 69  TLLKITHSLCSYLKS 25
            LL I ++L S +KS
Sbjct: 114 ALLDIANTLMSSVKS 128