BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029160
         (1169 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   373   e-101
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   369   1e-99
ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containi...   346   6e-93
ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containi...   346   6e-93
ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|2...   343   4e-92

>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
            chloroplastic [Vitis vinifera]
          Length = 825

 Score =  373 bits (957), Expect = e-101
 Identities = 175/260 (67%), Positives = 210/260 (80%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            +R  ++ NVFVGTAL+DMYSK  +I+YAE + +   EKNSVTYTTMI  YGQHG+GERAL
Sbjct: 552  IRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERAL 611

Query: 987  SMFHTMYESGLNPDAITFVAILSACSYSGLVDQGLKIFESMESLYGILPTAEHYSCVVDM 808
            S+FH M  SG+ PD++TFVAILSACSY+GLVD+GL+IF+SME  Y I P+AEHY CV DM
Sbjct: 612  SLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADM 671

Query: 807  LGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDAT 628
            LGR GRVVEAYEFVK LG++GN  GIWGSLLGACRIHG+ ELGK++A++L E+EK    T
Sbjct: 672  LGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLT 731

Query: 627  GYHVLLSNLYADKEMWDSADRVRKDMREKGLRKETGCSWIEICSVVNCFTSRDQTHPQCD 448
            GYHVLLSN+YA +  WD+ DRVRK+MR+KGL KE GCSW+E+   VNCF SRD  HPQC 
Sbjct: 732  GYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCA 791

Query: 447  AIYAKLEDLAVEMKAAGYRP 388
             IY  LE LA+EMK AGY+P
Sbjct: 792  EIYQMLEKLAMEMKDAGYKP 811



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
 Frame = -3

Query: 1143 VFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYE 964
            V +  A+I MYS+C SI  + K+ S++ E++ VT+ TM+  + Q+GL +  L +   M +
Sbjct: 357  VVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQK 416

Query: 963  SGLNPDAITFVAILSACS-----------YSGLVDQGLKIFESMESLYGILPTAEHYSCV 817
             G   D++T  A+LS  S           ++ L+  G++ FE M+S             +
Sbjct: 417  QGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDSY------------L 463

Query: 816  VDMLGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFE 652
            +DM  ++G +  A +  +   D       W +++     +G  E G  +  ++ E
Sbjct: 464  IDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518



 Score = 60.8 bits (146), Expect = 6e-07
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = -3

Query: 1125 LIDMYSKCASISYAEKMC--SSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYESGLN 952
            LIDMY+K   I+ A+++   +S  +++  T+  MI GY Q+GL E   ++F  M E  + 
Sbjct: 463  LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVR 522

Query: 951  PDAITFVAILSACSYSGLVDQGLKI 877
            P+A+T  +IL AC+  G +  G +I
Sbjct: 523  PNAVTLASILPACNPMGTIGLGKQI 547


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  369 bits (946), Expect = 1e-99
 Identities = 173/260 (66%), Positives = 209/260 (80%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            +R  ++ NVFVGTAL+DMYSK  +I+YAE + +   EKNSVTYTTMIL YGQHG+GERAL
Sbjct: 552  IRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERAL 611

Query: 987  SMFHTMYESGLNPDAITFVAILSACSYSGLVDQGLKIFESMESLYGILPTAEHYSCVVDM 808
            S+FH M  SG+ PD++TFVAILSACSY+GLVD+GL+IF+SME  Y I P++EHY CV DM
Sbjct: 612  SLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADM 671

Query: 807  LGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDAT 628
            LGR GRV EAYEFVK LG++GN   IWGSLLGACRIHG+ ELGK++A++L E+EK    T
Sbjct: 672  LGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLT 731

Query: 627  GYHVLLSNLYADKEMWDSADRVRKDMREKGLRKETGCSWIEICSVVNCFTSRDQTHPQCD 448
            GYHVLLSN+YA +  WD+ DRVRK+MR+KGL KE GCSW+E+   VNCF SRD  HPQC 
Sbjct: 732  GYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCA 791

Query: 447  AIYAKLEDLAVEMKAAGYRP 388
             IY  LE LA+EMK AGY+P
Sbjct: 792  EIYQMLEKLAMEMKDAGYKP 811



 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = -3

Query: 1125 LIDMYSKCASISYAEKMC--SSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYESGLN 952
            LIDMY+K   I+ A+++   +S  +++  T+  MI GY Q+GL E   ++F  M E  + 
Sbjct: 463  LIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVR 522

Query: 951  PDAITFVAILSACSYSGLVDQGLKI 877
            P+A+T  +IL AC+  G +  G +I
Sbjct: 523  PNAVTLASILPACNPMGTIGLGKQI 547



 Score = 61.2 bits (147), Expect = 5e-07
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
 Frame = -3

Query: 1143 VFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYE 964
            V +  A+I MYS+C SI  + K+ S++ E++ VT+ TM+  + Q+GL +  L +   M +
Sbjct: 357  VVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQK 416

Query: 963  SGLNPDAITFVAILSACS-----------YSGLVDQGLKIFESMESLYGILPTAEHYSCV 817
             G   D++T  A+LS  S           ++ L+  G++ FE M+              +
Sbjct: 417  QGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQ-FEGMDGY------------L 463

Query: 816  VDMLGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFE 652
            +DM  ++G +  A +  +           W +++     +G  E G  +  ++ E
Sbjct: 464  IDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIE 518


>ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
            chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  346 bits (888), Expect = 6e-93
 Identities = 166/260 (63%), Positives = 206/260 (79%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            +R+ +D NVFV TALIDMYSK  SI++AE + S   EK+ VTY+TMILGYGQHG+GE AL
Sbjct: 544  IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 603

Query: 987  SMFHTMYESGLNPDAITFVAILSACSYSGLVDQGLKIFESMESLYGILPTAEHYSCVVDM 808
             MFH M +SG+ PDA+T VA+LSACSY+GLVD+GL+IFESM ++Y I P+ EH+ CV DM
Sbjct: 604  FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADM 663

Query: 807  LGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDAT 628
            LGRAGRV +AYEFV  LG+KGNV  IWGSLL ACRIH + ELGK++A +L E+EK    T
Sbjct: 664  LGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKT 723

Query: 627  GYHVLLSNLYADKEMWDSADRVRKDMREKGLRKETGCSWIEICSVVNCFTSRDQTHPQCD 448
            GYHVLLSN+YA++  W++ D VRK MRE+GL+KETG SWIEI   +N F S+D+ HPQ D
Sbjct: 724  GYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSD 783

Query: 447  AIYAKLEDLAVEMKAAGYRP 388
             IY+ LE+L +EMK AGYRP
Sbjct: 784  QIYSMLEELLMEMKHAGYRP 803



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            ++++    V V  ALI MYS+C SI  + K+  ++PEK+ V++ TMI  + Q+GL + AL
Sbjct: 341  IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 400

Query: 987  SMFHTMYESGLNPDAITFVAILSACS-----------YSGLVDQGLKIFESMESLYGILP 841
             +F+ M +  L  D++T  A+LSA S           +  L+  G++ FE M+S      
Sbjct: 401  MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSY----- 454

Query: 840  TAEHYSCVVDMLGRAGRVVEAYE-FVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIAD 664
                   ++DM  ++G +  A   F K+   + + A  W S++     +G ++   +I  
Sbjct: 455  -------LIDMYAKSGLIEAAQNVFEKSFSHERDQA-TWNSMMSGYTQNGLVDQAFLILR 506

Query: 663  RLFE 652
            ++ +
Sbjct: 507  QMLD 510



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
 Frame = -3

Query: 1125 LIDMYSKCASISYAEKMC--SSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYESGLN 952
            LIDMY+K   I  A+ +   S   E++  T+ +M+ GY Q+GL ++A  +   M +  + 
Sbjct: 455  LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVM 514

Query: 951  PDAITFVAILSACSYSGLVDQGLKI--FESMESLYGILPTAEHYSCVVDMLGRAGRVVEA 778
            P+ +T  +IL AC+ SG +D G ++  F     L   +  A   + ++DM  ++G +  A
Sbjct: 515  PNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVA---TALIDMYSKSGSIAHA 571

Query: 777  YEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDATGYHVLLS 607
                    +K  V   + +++     HG  E    +  R+ +   + DA     +LS
Sbjct: 572  ENVFSKANEKSIVT--YSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLS 626


>ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
            chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  346 bits (888), Expect = 6e-93
 Identities = 166/260 (63%), Positives = 206/260 (79%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            +R+ +D NVFV TALIDMYSK  SI++AE + S   EK+ VTY+TMILGYGQHG+GE AL
Sbjct: 520  IRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESAL 579

Query: 987  SMFHTMYESGLNPDAITFVAILSACSYSGLVDQGLKIFESMESLYGILPTAEHYSCVVDM 808
             MFH M +SG+ PDA+T VA+LSACSY+GLVD+GL+IFESM ++Y I P+ EH+ CV DM
Sbjct: 580  FMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADM 639

Query: 807  LGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDAT 628
            LGRAGRV +AYEFV  LG+KGNV  IWGSLL ACRIH + ELGK++A +L E+EK    T
Sbjct: 640  LGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKT 699

Query: 627  GYHVLLSNLYADKEMWDSADRVRKDMREKGLRKETGCSWIEICSVVNCFTSRDQTHPQCD 448
            GYHVLLSN+YA++  W++ D VRK MRE+GL+KETG SWIEI   +N F S+D+ HPQ D
Sbjct: 700  GYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQSD 759

Query: 447  AIYAKLEDLAVEMKAAGYRP 388
             IY+ LE+L +EMK AGYRP
Sbjct: 760  QIYSMLEELLMEMKHAGYRP 779



 Score = 69.3 bits (168), Expect = 2e-09
 Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            ++++    V V  ALI MYS+C SI  + K+  ++PEK+ V++ TMI  + Q+GL + AL
Sbjct: 317  IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 376

Query: 987  SMFHTMYESGLNPDAITFVAILSACS-----------YSGLVDQGLKIFESMESLYGILP 841
             +F+ M +  L  D++T  A+LSA S           +  L+  G++ FE M+S      
Sbjct: 377  MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMDSY----- 430

Query: 840  TAEHYSCVVDMLGRAGRVVEAYE-FVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIAD 664
                   ++DM  ++G +  A   F K+   + + A  W S++     +G ++   +I  
Sbjct: 431  -------LIDMYAKSGLIEAAQNVFEKSFSHERDQA-TWNSMMSGYTQNGLVDQAFLILR 482

Query: 663  RLFE 652
            ++ +
Sbjct: 483  QMLD 486



 Score = 57.4 bits (137), Expect = 7e-06
 Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 4/177 (2%)
 Frame = -3

Query: 1125 LIDMYSKCASISYAEKMC--SSIPEKNSVTYTTMILGYGQHGLGERALSMFHTMYESGLN 952
            LIDMY+K   I  A+ +   S   E++  T+ +M+ GY Q+GL ++A  +   M +  + 
Sbjct: 431  LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVM 490

Query: 951  PDAITFVAILSACSYSGLVDQGLKI--FESMESLYGILPTAEHYSCVVDMLGRAGRVVEA 778
            P+ +T  +IL AC+ SG +D G ++  F     L   +  A   + ++DM  ++G +  A
Sbjct: 491  PNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVA---TALIDMYSKSGSIAHA 547

Query: 777  YEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDATGYHVLLS 607
                    +K  V   + +++     HG  E    +  R+ +   + DA     +LS
Sbjct: 548  ENVFSKANEKSIVT--YSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLS 602


>ref|XP_002308772.1| predicted protein [Populus trichocarpa] gi|222854748|gb|EEE92295.1|
            predicted protein [Populus trichocarpa]
          Length = 320

 Score =  343 bits (881), Expect = 4e-92
 Identities = 163/262 (62%), Positives = 207/262 (79%)
 Frame = -3

Query: 1167 VRHLIDNNVFVGTALIDMYSKCASISYAEKMCSSIPEKNSVTYTTMILGYGQHGLGERAL 988
            +R L+D N+FV T+L+DMYSK  SI+YAE + + +P+KNSVTYTTMIL YGQHG+GERAL
Sbjct: 57   IRLLLDKNIFVSTSLVDMYSKSGSINYAESVFTKLPDKNSVTYTTMILAYGQHGMGERAL 116

Query: 987  SMFHTMYESGLNPDAITFVAILSACSYSGLVDQGLKIFESMESLYGILPTAEHYSCVVDM 808
            S+FH+M +SG+ PDAITF+A+LSACS+SGLVD+GL+IFESME  + I P+  HY CV DM
Sbjct: 117  SLFHSMKKSGIEPDAITFIAVLSACSHSGLVDEGLQIFESMEKDFKIQPSTPHYCCVTDM 176

Query: 807  LGRAGRVVEAYEFVKALGDKGNVAGIWGSLLGACRIHGKLELGKIIADRLFELEKEIDAT 628
            LGR GRVVEAYEFVK LG+ GNV  IWGSLLGACR+H  +ELG+++A +L E+EK  + T
Sbjct: 177  LGRVGRVVEAYEFVKQLGEAGNVLEIWGSLLGACRLHEHVELGEVVAKKLLEMEKTGNIT 236

Query: 627  GYHVLLSNLYADKEMWDSADRVRKDMREKGLRKETGCSWIEICSVVNCFTSRDQTHPQCD 448
            GYHVLLSN+YA++  W + D+VR++MREKGL+KE G SWI+I   V  FTS+DQ HP  D
Sbjct: 237  GYHVLLSNIYAEEGNWVNVDKVRREMREKGLQKEVGSSWIDIGGSVARFTSKDQDHPHSD 296

Query: 447  AIYAKLEDLAVEMKAAGYRPTV 382
             IY  L  LA+EMK +   P +
Sbjct: 297  KIYEMLAGLAMEMKKSDRSPQI 318