BLASTX nr result
ID: Cimicifuga21_contig00029138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00029138
(536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygr... 77 5e-27
ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containi... 74 8e-27
dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens] 77 1e-26
ref|XP_001773953.1| predicted protein [Physcomitrella patens sub... 77 1e-26
ref|XP_003624481.1| Pentatricopeptide repeat-containing protein ... 76 2e-26
>gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 77.4 bits (189), Expect(2) = 5e-27
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = -1
Query: 254 QLSPKDPRTYVALSNIYAAAGRWEDVNKIRKLMNDHSVRKSPGHSWLRVNGTIHVFHAAD 75
+L+ ++P YV LSN+YAAAGRW+DV KIR++M +RK PG SW+ V+ IH F AAD
Sbjct: 986 KLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAAD 1045
Query: 74 K 72
+
Sbjct: 1046 R 1046
Score = 68.9 bits (167), Expect(2) = 5e-27
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Frame = -2
Query: 493 SHCGLIKEGYRYFKLIKK-----PTIDHYTCLIDLLDWAGNLE*ALSLIKEMPFKPNKVI 329
+H GL+ EG R F ++ PTI+HY CL+ LL AG + A +LI +MPF P+ +
Sbjct: 901 NHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAV 960
Query: 328 WTSLLASSLIPHNIVIGEYSAN 263
W +LL + I N+ + E++AN
Sbjct: 961 WETLLGACRIHGNVALAEHAAN 982
>ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 73.9 bits (180), Expect(2) = 8e-27
Identities = 30/61 (49%), Positives = 42/61 (68%)
Frame = -1
Query: 257 FQLSPKDPRTYVALSNIYAAAGRWEDVNKIRKLMNDHSVRKSPGHSWLRVNGTIHVFHAA 78
F+L P D + + LSNIYA GRW DV ++R ++ DH V+K PG SW+ +NG IH+F +
Sbjct: 750 FELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQ 809
Query: 77 D 75
D
Sbjct: 810 D 810
Score = 71.6 bits (174), Expect(2) = 8e-27
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Frame = -2
Query: 493 SHCGLIKEGYRYFKLIKK-----PTIDHYTCLIDLLDWAGNLE*ALSLIKEMPFKPNKVI 329
SH GL+ EG +YFK + PT++HY C++D+L AG L A SLI +MP P+ I
Sbjct: 666 SHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSI 725
Query: 328 WTSLLASSLIPHNIVIGEYSANIFF 254
W ++L + I NI I E +A F
Sbjct: 726 WRTILGACRIHRNIEIAERAAERLF 750
>dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 77.0 bits (188), Expect(2) = 1e-26
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -1
Query: 254 QLSPKDPRTYVALSNIYAAAGRWEDVNKIRKLMNDHSVRKSPGHSWLRVNGTIHVFHAAD 75
+L+ ++P Y+ LSN+YAAAGRW+DV KIR++M +RK PG SW+ V+ IH F AAD
Sbjct: 931 KLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAAD 990
Query: 74 K 72
+
Sbjct: 991 R 991
Score = 67.8 bits (164), Expect(2) = 1e-26
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Frame = -2
Query: 493 SHCGLIKEGYRYFKLIKK-----PTIDHYTCLIDLLDWAGNLE*ALSLIKEMPFKPNKVI 329
+H GL+ EGY+ F ++ PTI+HY CL+ LL A + A +LI +MPF P+ +
Sbjct: 846 NHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAV 905
Query: 328 WTSLLASSLIPHNIVIGEYSAN 263
W +LL + I NI + E++AN
Sbjct: 906 WETLLGACRIHGNIALAEHAAN 927
>ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 905
Score = 77.0 bits (188), Expect(2) = 1e-26
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = -1
Query: 254 QLSPKDPRTYVALSNIYAAAGRWEDVNKIRKLMNDHSVRKSPGHSWLRVNGTIHVFHAAD 75
+L+ ++P Y+ LSN+YAAAGRW+DV KIR++M +RK PG SW+ V+ IH F AAD
Sbjct: 730 KLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAAD 789
Query: 74 K 72
+
Sbjct: 790 R 790
Score = 67.8 bits (164), Expect(2) = 1e-26
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Frame = -2
Query: 493 SHCGLIKEGYRYFKLIKK-----PTIDHYTCLIDLLDWAGNLE*ALSLIKEMPFKPNKVI 329
+H GL+ EGY+ F ++ PTI+HY CL+ LL A + A +LI +MPF P+ +
Sbjct: 645 NHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAV 704
Query: 328 WTSLLASSLIPHNIVIGEYSAN 263
W +LL + I NI + E++AN
Sbjct: 705 WETLLGACRIHGNIALAEHAAN 726
>ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 672
Score = 76.3 bits (186), Expect(2) = 2e-26
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 5/88 (5%)
Frame = -2
Query: 502 AYISHCGLIKEGYRYFKLIK-----KPTIDHYTCLIDLLDWAGNLE*ALSLIKEMPFKPN 338
A SH GL+KEG+ +F +K +P I+HY+C++DLL AG L+ A LI+EM KP+
Sbjct: 409 AACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPD 468
Query: 337 KVIWTSLLASSLIPHNIVIGEYSANIFF 254
++W SLL + I N+ +GE SA F
Sbjct: 469 FIVWGSLLGACRIHKNVELGEISARKLF 496
Score = 68.2 bits (165), Expect(2) = 2e-26
Identities = 31/63 (49%), Positives = 43/63 (68%)
Frame = -1
Query: 257 FQLSPKDPRTYVALSNIYAAAGRWEDVNKIRKLMNDHSVRKSPGHSWLRVNGTIHVFHAA 78
F+L P + YV LSNIYA AGRW+DV ++R LM +H + K+PG+S + G +HVF
Sbjct: 496 FKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVG 555
Query: 77 DKQ 69
DK+
Sbjct: 556 DKE 558