BLASTX nr result

ID: Cimicifuga21_contig00029078 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00029078
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleop...    77   2e-12
ref|XP_004147652.1| PREDICTED: U11/U12 small nuclear ribonucleop...    74   9e-12
ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-11
ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814...    73   3e-11
ref|XP_003530916.1| PREDICTED: uncharacterized protein LOC100807...    73   3e-11

>ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
           [Vitis vinifera] gi|297743756|emb|CBI36639.3| unnamed
           protein product [Vitis vinifera]
          Length = 340

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 35/45 (77%), Positives = 39/45 (86%)
 Frame = -1

Query: 136 SRGKGDLVFYADSYHPIQSGSIDSTDILPHDNAVYRALLCSSAGL 2
           S  + + VFYA+SYHPIQ+GSID TD LPHDNAVYRALLCSSAGL
Sbjct: 2   SGSRANAVFYAESYHPIQAGSIDGTDTLPHDNAVYRALLCSSAGL 46


>ref|XP_004147652.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa
           protein-like [Cucumis sativus]
           gi|449498819|ref|XP_004160643.1| PREDICTED: U11/U12
           small nuclear ribonucleoprotein 35 kDa protein-like
           [Cucumis sativus]
          Length = 333

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 34/38 (89%), Positives = 36/38 (94%)
 Frame = -1

Query: 115 VFYADSYHPIQSGSIDSTDILPHDNAVYRALLCSSAGL 2
           VFYAD+YHPIQ+GSID TDIL HDNAVYRALLCSSAGL
Sbjct: 9   VFYADNYHPIQAGSIDGTDILSHDNAVYRALLCSSAGL 46


>ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|222837365|gb|EEE75744.1|
           predicted protein [Populus trichocarpa]
          Length = 317

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = -1

Query: 115 VFYADSYHPIQSGSIDSTDILPHDNAVYRALLCSSAGL 2
           VFYAD+YHPIQ+GSID TD  PHDNAVYRALLCSSAGL
Sbjct: 9   VFYADAYHPIQAGSIDGTDTAPHDNAVYRALLCSSAGL 46


>ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814109 [Glycine max]
          Length = 347

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = -1

Query: 115 VFYADSYHPIQSGSIDSTDILPHDNAVYRALLCSSAGL 2
           VFYADSYHPIQ+GSID TD++PHDNAVYRA LCSS GL
Sbjct: 11  VFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGL 48


>ref|XP_003530916.1| PREDICTED: uncharacterized protein LOC100807978 [Glycine max]
          Length = 358

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = -1

Query: 115 VFYADSYHPIQSGSIDSTDILPHDNAVYRALLCSSAGL 2
           VFYADSYHPIQ+GSID TD++PHDNAVYRA LCSS GL
Sbjct: 11  VFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGL 48


Top