BLASTX nr result
ID: Cimicifuga21_contig00028930
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cimicifuga21_contig00028930 (228 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-contain... 49 1e-12 emb|CBI17455.3| unnamed protein product [Vitis vinifera] 49 1e-12 ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|2... 49 1e-11 ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communi... 48 2e-11 dbj|BAJ99084.1| predicted protein [Hordeum vulgare subsp. vulgare] 52 2e-11 >ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Vitis vinifera] Length = 493 Score = 49.3 bits (116), Expect(2) = 1e-12 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +2 Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226 MTIK D+V+VCA N DD+S L++ IFEE E GD N Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176 Score = 48.5 bits (114), Expect(2) = 1e-12 Identities = 19/24 (79%), Positives = 22/24 (91%) Frame = +3 Query: 3 NYDDEEDGIEIFGAGLGDTYYPSN 74 +YDDE+DGIE+F GLGDTYYPSN Sbjct: 98 HYDDEDDGIEVFSKGLGDTYYPSN 121 >emb|CBI17455.3| unnamed protein product [Vitis vinifera] Length = 492 Score = 49.3 bits (116), Expect(2) = 1e-12 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +2 Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226 MTIK D+V+VCA N DD+S L++ IFEE E GD N Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176 Score = 48.5 bits (114), Expect(2) = 1e-12 Identities = 19/24 (79%), Positives = 22/24 (91%) Frame = +3 Query: 3 NYDDEEDGIEIFGAGLGDTYYPSN 74 +YDDE+DGIE+F GLGDTYYPSN Sbjct: 98 HYDDEDDGIEVFSKGLGDTYYPSN 121 >ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|222839644|gb|EEE77967.1| predicted protein [Populus trichocarpa] Length = 489 Score = 49.3 bits (116), Expect(2) = 1e-11 Identities = 20/24 (83%), Positives = 21/24 (87%) Frame = +3 Query: 3 NYDDEEDGIEIFGAGLGDTYYPSN 74 NYDDEEDGIE+F GLGD YYPSN Sbjct: 101 NYDDEEDGIELFSTGLGDLYYPSN 124 Score = 45.1 bits (105), Expect(2) = 1e-11 Identities = 19/36 (52%), Positives = 25/36 (69%) Frame = +2 Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226 M IKP DAV+VCA N+D+ S L++ I +E GD N Sbjct: 144 MAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSN 179 >ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communis] gi|223539196|gb|EEF40789.1| WD-repeat protein, putative [Ricinus communis] Length = 493 Score = 48.1 bits (113), Expect(2) = 2e-11 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +2 Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226 MTI P DAV+VCA NED+ S L++ I EE + GD N Sbjct: 140 MTINPKDAVIVCARNEDEFSHLEVWIIEESDDGDSN 175 Score = 45.1 bits (105), Expect(2) = 2e-11 Identities = 17/24 (70%), Positives = 21/24 (87%) Frame = +3 Query: 3 NYDDEEDGIEIFGAGLGDTYYPSN 74 NYD+E++GIE+F GLGD YYPSN Sbjct: 97 NYDEEDEGIELFSTGLGDLYYPSN 120 >dbj|BAJ99084.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 265 Score = 51.6 bits (122), Expect(2) = 2e-11 Identities = 23/36 (63%), Positives = 28/36 (77%) Frame = +2 Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226 MTIKP+D V+VCA NED+ + LQ+ I EELE GD N Sbjct: 154 MTIKPTDIVIVCAHNEDEFNSLQVSIVEELEDGDPN 189 Score = 41.6 bits (96), Expect(2) = 2e-11 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = +3 Query: 6 YDDEEDGIEIFGAGLGDTYYPSN 74 YD+EEDG+E+F GLGD YY SN Sbjct: 107 YDEEEDGLELFSTGLGDLYYKSN 129