BLASTX nr result

ID: Cimicifuga21_contig00028930 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028930
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-contain...    49   1e-12
emb|CBI17455.3| unnamed protein product [Vitis vinifera]               49   1e-12
ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|2...    49   1e-11
ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communi...    48   2e-11
dbj|BAJ99084.1| predicted protein [Hordeum vulgare subsp. vulgare]     52   2e-11

>ref|XP_002275719.1| PREDICTED: uncharacterized WD repeat-containing protein
           C17D11.16-like [Vitis vinifera]
          Length = 493

 Score = 49.3 bits (116), Expect(2) = 1e-12
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +2

Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226
           MTIK  D+V+VCA N DD+S L++ IFEE E GD N
Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176



 Score = 48.5 bits (114), Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +3

Query: 3   NYDDEEDGIEIFGAGLGDTYYPSN 74
           +YDDE+DGIE+F  GLGDTYYPSN
Sbjct: 98  HYDDEDDGIEVFSKGLGDTYYPSN 121


>emb|CBI17455.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score = 49.3 bits (116), Expect(2) = 1e-12
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +2

Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226
           MTIK  D+V+VCA N DD+S L++ IFEE E GD N
Sbjct: 141 MTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSN 176



 Score = 48.5 bits (114), Expect(2) = 1e-12
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +3

Query: 3   NYDDEEDGIEIFGAGLGDTYYPSN 74
           +YDDE+DGIE+F  GLGDTYYPSN
Sbjct: 98  HYDDEDDGIEVFSKGLGDTYYPSN 121


>ref|XP_002334041.1| predicted protein [Populus trichocarpa] gi|222839644|gb|EEE77967.1|
           predicted protein [Populus trichocarpa]
          Length = 489

 Score = 49.3 bits (116), Expect(2) = 1e-11
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   NYDDEEDGIEIFGAGLGDTYYPSN 74
           NYDDEEDGIE+F  GLGD YYPSN
Sbjct: 101 NYDDEEDGIELFSTGLGDLYYPSN 124



 Score = 45.1 bits (105), Expect(2) = 1e-11
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = +2

Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226
           M IKP DAV+VCA N+D+ S L++ I +E   GD N
Sbjct: 144 MAIKPKDAVIVCACNKDEFSNLEVWILDETSDGDSN 179


>ref|XP_002521518.1| WD-repeat protein, putative [Ricinus communis]
           gi|223539196|gb|EEF40789.1| WD-repeat protein, putative
           [Ricinus communis]
          Length = 493

 Score = 48.1 bits (113), Expect(2) = 2e-11
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226
           MTI P DAV+VCA NED+ S L++ I EE + GD N
Sbjct: 140 MTINPKDAVIVCARNEDEFSHLEVWIIEESDDGDSN 175



 Score = 45.1 bits (105), Expect(2) = 2e-11
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   NYDDEEDGIEIFGAGLGDTYYPSN 74
           NYD+E++GIE+F  GLGD YYPSN
Sbjct: 97  NYDEEDEGIELFSTGLGDLYYPSN 120


>dbj|BAJ99084.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 265

 Score = 51.6 bits (122), Expect(2) = 2e-11
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 119 MTIKPSDAVVVCASNEDDVSQLQICIFEELESGDYN 226
           MTIKP+D V+VCA NED+ + LQ+ I EELE GD N
Sbjct: 154 MTIKPTDIVIVCAHNEDEFNSLQVSIVEELEDGDPN 189



 Score = 41.6 bits (96), Expect(2) = 2e-11
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +3

Query: 6   YDDEEDGIEIFGAGLGDTYYPSN 74
           YD+EEDG+E+F  GLGD YY SN
Sbjct: 107 YDEEEDGLELFSTGLGDLYYKSN 129


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