BLASTX nr result

ID: Cimicifuga21_contig00028762 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028762
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX95129.1| retrotransposon protein, putative, unclassified [...    57   2e-06
gb|ABA91837.2| retrotransposon protein, putative, unclassified [...    57   2e-06

>gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|62733115|gb|AAX95232.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 1324

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = -2

Query: 119 MKILAWNCRGCGNEPTVLQLLKMIKKLDPDLIFLSETKV 3
           MKI+AWNCRG GN PTV  LL + K+ DPD++FLS TK+
Sbjct: 448 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKM 486


>gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1301

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = -2

Query: 119 MKILAWNCRGCGNEPTVLQLLKMIKKLDPDLIFLSETKV 3
           MKI+AWNCRG GN PTV  LL + K+ DPD++FLS TK+
Sbjct: 425 MKIIAWNCRGLGNGPTVRGLLNLQKEDDPDILFLSNTKM 463


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