BLASTX nr result
ID: Cimicifuga21_contig00028691
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00028691
(527 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002532325.1| ubiquitin ligase E3 alpha, putative [Ricinus... 115 3e-24
ref|XP_002270537.2| PREDICTED: E3 ubiquitin-protein ligase UBR2-... 112 3e-23
emb|CBI30553.3| unnamed protein product [Vitis vinifera] 112 3e-23
ref|XP_003623126.1| E3 ubiquitin-protein ligase ubr1 [Medicago t... 100 1e-19
ref|XP_003552169.1| PREDICTED: E3 ubiquitin-protein ligase UBR3-... 98 7e-19
>ref|XP_002532325.1| ubiquitin ligase E3 alpha, putative [Ricinus communis]
gi|223527968|gb|EEF30052.1| ubiquitin ligase E3 alpha,
putative [Ricinus communis]
Length = 2073
Score = 115 bits (289), Expect = 3e-24
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Frame = -2
Query: 526 YFPDRGDGFSKSPRVDHSMFLCDTLKYSLISTE--------------------------- 428
YFP R D FS+S R + M + DTLKYSL+S E
Sbjct: 1569 YFPSRQDKFSRSTRANQFMIMWDTLKYSLVSMEIAARSGRIHMTPTYSLDALYKELQSSS 1628
Query: 427 ------LLPVVECLPCRQEVHLFCPFFFMLFKAREVRIFVRCF*GSKECNSLKSPIYFSF 266
LL +V L + +H+ F R +++F + C+ +
Sbjct: 1629 GFVLALLLKIVHSLRSKNSLHVLQRF-------RGIQLFAKSI-----CSGV-------- 1668
Query: 265 SADQSSMDSGNQQGSISSVLKHADSGIAYPDIQLWK*TADPVLSYDPFSSLMWILFFLSR 86
SAD +S G ++G SS+LK + + YPDIQ W ADP+L +D FSSLMW+LF L
Sbjct: 1669 SADHASRTCG-RKGDASSILKQVEKELPYPDIQFWNQAADPILIHDAFSSLMWVLFCLPH 1727
Query: 85 PFLFCRDSLLSLVHLLYCVRVIQALI 8
PFL C +SLLSLVH+ Y V + QA++
Sbjct: 1728 PFLSCEESLLSLVHIFYLVSIAQAIL 1753
>ref|XP_002270537.2| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera]
Length = 2048
Score = 112 bits (280), Expect = 3e-23
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 33/207 (15%)
Frame = -2
Query: 526 YFPDRGDGFSKSPRVDHSMFLCDTLKYSLISTE--------------------------- 428
YFP + D S S RV + + D LKYSLISTE
Sbjct: 1556 YFPGKYDKVSGSTRVSQFIIMWDILKYSLISTEIASRCGRTSTTPTYCVDSLYKELNSST 1615
Query: 427 ------LLPVVECLPCRQEVHLFCPFFFMLFKAREVRIFVRCF*GSKECNSLKSPIYFSF 266
LL +V+ + H+ L + R +++F +
Sbjct: 1616 GFILTLLLSIVQSMRNENPHHV-------LLRFRGIQLFA-------------GSVCHGI 1655
Query: 265 SADQSSMDSGNQQGSISSVLKHADSGIAYPDIQLWK*TADPVLSYDPFSSLMWILFFLSR 86
S D+ + Q G++ S+L+H ++ ++YPDIQ WK +DPVL++DPFSSL+W+LF L
Sbjct: 1656 SVDEFPSTASTQGGNMLSILEHIETEVSYPDIQFWKRASDPVLAHDPFSSLIWVLFCLPY 1715
Query: 85 PFLFCRDSLLSLVHLLYCVRVIQALIT 5
PFL C++ SLVHL Y V V+QA+IT
Sbjct: 1716 PFLLCKEVFFSLVHLYYAVSVVQAIIT 1742
>emb|CBI30553.3| unnamed protein product [Vitis vinifera]
Length = 1254
Score = 112 bits (280), Expect = 3e-23
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 33/207 (15%)
Frame = -2
Query: 526 YFPDRGDGFSKSPRVDHSMFLCDTLKYSLISTE--------------------------- 428
YFP + D S S RV + + D LKYSLISTE
Sbjct: 762 YFPGKYDKVSGSTRVSQFIIMWDILKYSLISTEIASRCGRTSTTPTYCVDSLYKELNSST 821
Query: 427 ------LLPVVECLPCRQEVHLFCPFFFMLFKAREVRIFVRCF*GSKECNSLKSPIYFSF 266
LL +V+ + H+ L + R +++F +
Sbjct: 822 GFILTLLLSIVQSMRNENPHHV-------LLRFRGIQLFA-------------GSVCHGI 861
Query: 265 SADQSSMDSGNQQGSISSVLKHADSGIAYPDIQLWK*TADPVLSYDPFSSLMWILFFLSR 86
S D+ + Q G++ S+L+H ++ ++YPDIQ WK +DPVL++DPFSSL+W+LF L
Sbjct: 862 SVDEFPSTASTQGGNMLSILEHIETEVSYPDIQFWKRASDPVLAHDPFSSLIWVLFCLPY 921
Query: 85 PFLFCRDSLLSLVHLLYCVRVIQALIT 5
PFL C++ SLVHL Y V V+QA+IT
Sbjct: 922 PFLLCKEVFFSLVHLYYAVSVVQAIIT 948
>ref|XP_003623126.1| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula]
gi|355498141|gb|AES79344.1| E3 ubiquitin-protein ligase
ubr1 [Medicago truncatula]
Length = 2105
Score = 100 bits (250), Expect = 1e-19
Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 17/190 (8%)
Frame = -2
Query: 526 YFPDRGDGFSKSPRVDHSMFLCDTLKYSLIS---------TELLPVVECLPCRQEVHLFC 374
YFP + D S+ +V+HS+ + DTLKYSL S T L P +E+
Sbjct: 1523 YFPGKQDKLSRFSKVNHSLLMWDTLKYSLTSMEIVARCGKTSLTPNFALSAMYKELESSS 1582
Query: 373 PFF-FMLFKA-------REVRIFVRCF*GSKECNSLKSPIYFSFSADQSSMDSGNQQGSI 218
F +ML K + + R S+ S + S + ++ SG +G +
Sbjct: 1583 GFILYMLLKLVQKTRSKNSIHVLQRFRGVQLFAESICSGVSLSHA---DNVISG--RGDM 1637
Query: 217 SSVLKHADSGIAYPDIQLWK*TADPVLSYDPFSSLMWILFFLSRPFLFCRDSLLSLVHLL 38
SVLKH + + DI W +DPVL++DPFS+LMW+LF L PFL C +SLLSLVH
Sbjct: 1638 LSVLKHIEMDQSNTDICFWNEASDPVLAHDPFSTLMWVLFCLPHPFLSCEESLLSLVHAF 1697
Query: 37 YCVRVIQALI 8
Y V V QA+I
Sbjct: 1698 YMVAVTQAII 1707
>ref|XP_003552169.1| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]
Length = 2036
Score = 98.2 bits (243), Expect = 7e-19
Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 13/186 (6%)
Frame = -2
Query: 526 YFPDRGDGFSKSPRVDHSMFLCDTLKYSLISTELLPVVECLPCRQEVHLFCPFFFMLFKA 347
Y P + + S+ R++HSM + DTLKYSL S E+ C + + K+
Sbjct: 1545 YSPCKEEKLSRFSRLNHSMLMWDTLKYSLTSMEI--AARCGKTSLTPNFALSALYEELKS 1602
Query: 346 RE---VRIFVRCF*GSKECNSLKSPIYF--------SFSADQSSMDSGNQQGS--ISSVL 206
+ + ++ ++ NSL F S +D S + N+ G+ + S+L
Sbjct: 1603 SSGFILSLMLKLVQKTRSNNSLHVLQRFRGVQLFAESICSDVSLNYTNNESGTGDMLSIL 1662
Query: 205 KHADSGIAYPDIQLWK*TADPVLSYDPFSSLMWILFFLSRPFLFCRDSLLSLVHLLYCVR 26
KH D ++ I W +DPVL +DPFS+LMW+LF L PFL C +SLLSLVH+ Y V
Sbjct: 1663 KHIDMDLSNTYISFWSQASDPVLFHDPFSTLMWVLFCLPHPFLSCEESLLSLVHVFYIVA 1722
Query: 25 VIQALI 8
V QA+I
Sbjct: 1723 VTQAII 1728