BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028571
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar...   238   3e-61
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali...   238   3e-61
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...   238   3e-61
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   238   4e-61
ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   237   6e-61

>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
          Length = 1383

 Score =  238 bits (608), Expect = 3e-61
 Identities = 111/119 (93%), Positives = 116/119 (97%)
 Frame = +1

Query: 1   RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 180
           RAR+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+TLMGVQNNLCTPKNGE
Sbjct: 477 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 536

Query: 181 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDPIDLPTPALMKPIELWTGK 357
           ILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGD MD IDLPTP ++KPIELWTGK
Sbjct: 537 ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGK 595


>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
           gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
           [Arabidopsis thaliana]
          Length = 1391

 Score =  238 bits (608), Expect = 3e-61
 Identities = 111/119 (93%), Positives = 116/119 (97%)
 Frame = +1

Query: 1   RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 180
           RAR+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+TLMGVQNNLCTPKNGE
Sbjct: 487 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 546

Query: 181 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDPIDLPTPALMKPIELWTGK 357
           ILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGD MD IDLPTP ++KPIELWTGK
Sbjct: 547 ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGK 605


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
           gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
           [Arabidopsis thaliana]
          Length = 1376

 Score =  238 bits (608), Expect = 3e-61
 Identities = 111/119 (93%), Positives = 116/119 (97%)
 Frame = +1

Query: 1   RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 180
           RAR+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+TLMGVQNNLCTPKNGE
Sbjct: 477 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 536

Query: 181 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDPIDLPTPALMKPIELWTGK 357
           ILVASTQDFLTSSFLITRKDTFYDRAAFSL+CSYMGD MD IDLPTP ++KPIELWTGK
Sbjct: 537 ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGK 595


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
           vinifera]
          Length = 1383

 Score =  238 bits (607), Expect = 4e-61
 Identities = 111/119 (93%), Positives = 116/119 (97%)
 Frame = +1

Query: 1   RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 180
           RAR+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL LMGVQNNLCTPKNGE
Sbjct: 475 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGE 534

Query: 181 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDPIDLPTPALMKPIELWTGK 357
           ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGD MD +DLPTPA++KP+ELWTGK
Sbjct: 535 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGK 593


>ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit rpc1-like, partial [Cucumis sativus]
          Length = 693

 Score =  237 bits (605), Expect = 6e-61
 Identities = 112/119 (94%), Positives = 115/119 (96%)
 Frame = +1

Query: 1   RARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGE 180
           R RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGE
Sbjct: 169 RVRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGE 228

Query: 181 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDAMDPIDLPTPALMKPIELWTGK 357
           ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGD MD +DLPTPAL+KPIELWTGK
Sbjct: 229 ILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGK 287