BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028561
         (470 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34953.3| unnamed protein product [Vitis vinifera]               80   1e-13
ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vit...    80   1e-13
ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus c...    75   6e-12
ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair p...    62   6e-08
ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [S...    56   3e-06

>emb|CBI34953.3| unnamed protein product [Vitis vinifera]
          Length = 1449

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 55/146 (37%), Positives = 69/146 (47%)
 Frame = +3

Query: 3   IRMTRDLQRNLDLMKEIQQKEDNHSERREAIFNKIVLGDPETFSVNTHQLEASNEGNVVI 182
           IRMTRDLQRNLDLMKEI+Q   N                              N G V +
Sbjct: 385 IRMTRDLQRNLDLMKEIEQDRTNED----------------------------NNGIVTL 416

Query: 183 SSFNEDEIQGENPQVQENKTAMNISFFEDEIVNKSRXXXXXXXLFAHLVAGSSVTLSSGK 362
           +  NE  I        +N  ++ ISF +D    +         LFA LVAG+ V +SS  
Sbjct: 417 NKTNEQSIP-------DNGASIEISFEDD---GEHNCLNGDDELFASLVAGNPVIISSSD 466

Query: 363 NDFSGKHPSDTASDCSWEEGIIDEKG 440
              S + P+D+ASD  WEEGII+EKG
Sbjct: 467 AALSNRRPADSASDSDWEEGIIEEKG 492


>ref|XP_002275112.1| PREDICTED: DNA repair protein UVH3-like [Vitis vinifera]
          Length = 1513

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 55/146 (37%), Positives = 69/146 (47%)
 Frame = +3

Query: 3   IRMTRDLQRNLDLMKEIQQKEDNHSERREAIFNKIVLGDPETFSVNTHQLEASNEGNVVI 182
           IRMTRDLQRNLDLMKEI+Q   N                              N G V +
Sbjct: 385 IRMTRDLQRNLDLMKEIEQDRTNED----------------------------NNGIVTL 416

Query: 183 SSFNEDEIQGENPQVQENKTAMNISFFEDEIVNKSRXXXXXXXLFAHLVAGSSVTLSSGK 362
           +  NE  I        +N  ++ ISF +D    +         LFA LVAG+ V +SS  
Sbjct: 417 NKTNEQSIP-------DNGASIEISFEDD---GEHNCLNGDDELFASLVAGNPVIISSSD 466

Query: 363 NDFSGKHPSDTASDCSWEEGIIDEKG 440
              S + P+D+ASD  WEEGII+EKG
Sbjct: 467 AALSNRRPADSASDSDWEEGIIEEKG 492


>ref|XP_002517370.1| DNA-repair protein UVH3, putative [Ricinus communis]
           gi|223543381|gb|EEF44912.1| DNA-repair protein UVH3,
           putative [Ricinus communis]
          Length = 1641

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
 Frame = +3

Query: 3   IRMTRDLQRNLDLMKEIQQKEDNHSERR--EAIFNKIVLGDPETFSVNTHQLEASNEGNV 176
           +RMTRDLQRNLDLMKEI+Q+  +  E    ++   +  +G P++F      +E+S++ + 
Sbjct: 457 MRMTRDLQRNLDLMKEIEQERTHAIETAPSQSELTRDKIGSPKSFPSKKLHVESSHDKHS 516

Query: 177 VISSFNEDEIQGENPQVQENKTAMNISFFEDEIVNKSRXXXXXXXLFAHLVAGSSVTLSS 356
                NE   Q     +  ++ ++ ISF  D    +S+       +F  LVAG  V + S
Sbjct: 517 DSVKLNERNQQS----MLNDEGSIQISFEAD---GRSKCLDSDDDVFTSLVAGQPVNIPS 569

Query: 357 GKNDFSGKHPSDTASDCSWEEGIIDEKGIHFSN 455
             N  S    SD+ASD  WEEG I+ +G   SN
Sbjct: 570 VDNITSRIQTSDSASDGDWEEGTIETRGNSSSN 602


>ref|XP_003517957.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein UVH3-like
           [Glycine max]
          Length = 1707

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
 Frame = +3

Query: 3   IRMTRDLQRNLDLMKEIQQKEDNHSERREAIFNKIV-LGDPETFSVNTHQLEASNEGNVV 179
           +RMT D+QRNLDL+KEI+Q+         A  NK   +G  E  + N    E+S    V 
Sbjct: 540 MRMTCDIQRNLDLLKEIEQER--------AYVNKAANIGTVEN-AENNGPYESSGIQLVG 590

Query: 180 ISSFNEDEIQGENPQVQENK----TAMNISFFEDEIVNKSRXXXXXXXLFAHLVAGSSVT 347
            S     ++ G+N Q ++      T + ISF  D    K++       +F+ LV G+ V 
Sbjct: 591 KSQEMNVDLVGQNMQNEQTMLDRDTLIEISFEYD---CKNKFANDEDDIFSSLVGGNPVA 647

Query: 348 LSSGKNDFSGKHPSDTASDCSWEEGIIDEK 437
           +    +  + + PS + SDC WEEGI++ K
Sbjct: 648 IFGADDTAATEQPSHSDSDCDWEEGILEGK 677


>ref|XP_002468313.1| hypothetical protein SORBIDRAFT_01g043560 [Sorghum bicolor]
           gi|241922167|gb|EER95311.1| hypothetical protein
           SORBIDRAFT_01g043560 [Sorghum bicolor]
          Length = 1489

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 49/162 (30%), Positives = 66/162 (40%), Gaps = 19/162 (11%)
 Frame = +3

Query: 3   IRMTRDLQRNLDLMKEIQQKEDNHSERREAIFNKIVLGDPETFSVNTHQLEASNEGNVVI 182
           IRMTRD+QRNLD +KE +Q +     +           +P  F       E   E N + 
Sbjct: 400 IRMTRDIQRNLDFIKENEQVKSKGQTQTSVHNGSTGNEEPPVFP------EHLFESNKLQ 453

Query: 183 SSFNEDE----IQGENPQVQE---------------NKTAMNISFFEDEIVNKSRXXXXX 305
           SS N DE       EN Q                  NK A+ ISF  D+   K       
Sbjct: 454 SSCNPDEDLSETDRENHQTSSQVEAADNISESSCHGNKEAIEISFSVDQTELKD----GD 509

Query: 306 XXLFAHLVAGSSVTLSSGKNDFSGKHPSDTASDCSWEEGIID 431
             +F  LV+GS+  + SG N           S+C WE+G+I+
Sbjct: 510 EDIFLQLVSGSTSNMFSGNNCLVKNTEESEDSECIWEDGVIE 551