BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028486
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-depe...   108   6e-22
ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-depe...    97   2e-18
ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-depe...    96   3e-18
ref|XP_003597474.1| Pre-mRNA-splicing factor ATP-dependent RNA h...    82   6e-14
ref|XP_002527133.1| ATP-dependent RNA helicase, putative [Ricinu...    81   8e-14

>ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Vitis vinifera]
          Length = 1289

 Score =  108 bits (269), Expect = 6e-22
 Identities = 58/141 (41%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
 Frame = +3

Query: 15  GTMDIDKTTITSEPEKPSNGGLQLHGKDRVVFRPREEKSCIGLDVNAERY---SKSDGMF 185
           G +D+D+ T+T EP++   GGL + GKDRVVFRP + KS +GLDV A+     SK+DG F
Sbjct: 9   GPIDLDQATVTFEPDQGGGGGLHVPGKDRVVFRPPQRKSLLGLDVLADAKRGGSKADGAF 68

Query: 186 KIPKERPLSAMTVIEEDEKPTSSELAEVGTELCTVGRIHSGRHYRGITVQASPHSESSLE 365
           K+P+E+  S +  ++E+E   SS + E  + + +  R  SGR YR      + H ES++ 
Sbjct: 69  KVPREKGASVVASMDEEESSLSSGIDEEISTVISGVRNGSGRRYRETAASEASHLESNVT 128

Query: 366 SHGQVDNRFKTHLSDEHPHSE 428
             G V + F+TH S+E   SE
Sbjct: 129 QEGAVSDTFETHRSNERMPSE 149


>ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Glycine max]
          Length = 1272

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
 Frame = +3

Query: 15  GTMDIDKTTITSEPEKPSNGGLQLHGKDRVVFRPREEKSCIGLDVNAE-RYSKSDGMFKI 191
           G +DIDK T T EPEKP++GGL + GKDR+V+ P+E KS +GLD  A  + S+ D  FK+
Sbjct: 11  GVVDIDKITATLEPEKPTSGGLYVPGKDRMVYVPQERKSRLGLDALASAKRSQHDAGFKV 70

Query: 192 PKERPLSAMTVIEEDEKPTSSELAEVGTELCTVGRIHSGRHYRGITVQASPHSESSL-ES 368
           PKER +S     E+++K   S   E G +     R H+ R YR  T + S HSESS+ E 
Sbjct: 71  PKERTISIAASAEDEDKSELSVSEESGHDGIVNRRRHTNRRYRDTTNETS-HSESSVTED 129

Query: 369 HGQVDNRFKTHLSDEHPHSE 428
           H    NR     S EH  S+
Sbjct: 130 HYGDTNRTP---SSEHKGSD 146


>ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16-like [Glycine max]
          Length = 1270

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 2/127 (1%)
 Frame = +3

Query: 15  GTMDIDKTTITSEPEKPSNGGLQLHGKDRVVFRPREEKSCIGLDVNAE-RYSKSDGMFKI 191
           G +DIDKTT T E EKP++GGL + GKDRVV+ P+E KS +GLD  A  + S+ D  FK+
Sbjct: 9   GVIDIDKTTTTLEQEKPTSGGLYVPGKDRVVYVPQERKSRLGLDALASAKRSQHDVGFKV 68

Query: 192 PKERPLSAMTVIEEDEKPTSSELAEVGTELCTVGRIHSGRHYRGITVQASPHSESSL-ES 368
           PKER +S     E+++K  SS   E G +     R H+ R YR  T + S H+ESS+ E 
Sbjct: 69  PKERTISIAASAEDEDKSESSVSEESGHDGIVNRRRHTNRRYRDTTNETS-HAESSVTED 127

Query: 369 HGQVDNR 389
           H    NR
Sbjct: 128 HYGDTNR 134


>ref|XP_003597474.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago
           truncatula] gi|355486522|gb|AES67725.1|
           Pre-mRNA-splicing factor ATP-dependent RNA helicase
           PRP16 [Medicago truncatula]
          Length = 1269

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 53/124 (42%), Positives = 71/124 (57%), Gaps = 3/124 (2%)
 Frame = +3

Query: 21  MDIDKTTITSEPEKPSNGGLQLHGKDRVVFRPREEKSCIGLDVNA---ERYSKSDGMFKI 191
           +DI+KTT T EPEK + GGL + GKDRVV+   E KS +GLD  A      S+SDG FK+
Sbjct: 11  VDINKTTTTLEPEKSTGGGLYVPGKDRVVYVAPERKSRLGLDTLAIAKRGESQSDGAFKV 70

Query: 192 PKERPLSAMTVIEEDEKPTSSELAEVGTELCTVGRIHSGRHYRGITVQASPHSESSLESH 371
           PKE   S     E+++K  SS++ E   +  T  R ++ R YR  T + S  +ESSL   
Sbjct: 71  PKEITTSIAAAAEDEDKSESSDVVEESGQAGT--RRNAHRRYRETTSETS-RAESSLTDD 127

Query: 372 GQVD 383
              D
Sbjct: 128 HHAD 131


>ref|XP_002527133.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223533556|gb|EEF35296.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1269

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
 Frame = +3

Query: 51  EPEKPSNGG--LQLHGKDRVVFRPREEKSCIGLDV--NAERY-SKSDGMFKIPKERPLSA 215
           EPEK   GG  L + GKDRV F+P + KS +GLD   NA+R  S ++G+FK+PKER  S 
Sbjct: 2   EPEKSEGGGGLLFVPGKDRVEFKPPQRKSLLGLDALANAKRSGSDTNGVFKVPKERVTSV 61

Query: 216 MTVIEEDEKPTSSELAEVGTELCTVG--RIHSGRHYRGITVQASPHSESSLESHGQVDNR 389
              I+E E  +SS + EVG    + G    H  R YR  + + + H ES++   G V + 
Sbjct: 62  AASIDEGELDSSSGIDEVGGGSASNGTHSNHVNRRYRETSARDTSHGESTVTREGSVSDT 121

Query: 390 FKTHLSDEHPHS 425
            ++H S E+  S
Sbjct: 122 HESHRSRENKSS 133