BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028335
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15839.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002879469.1| pentatricopeptide repeat-containing protein ...    89   4e-16
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...    87   1e-15
ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arab...    87   2e-15
ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15

>emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 47/98 (47%), Positives = 71/98 (72%)
 Frame = +3

Query: 120 LIQASTETIGKNQDFLGFYNSMLSENVAPDNSTFRMILRASADSLSANKLGNTFHCQIIK 299
           +I+ S E+ G   DFLGFY+ ML  +V P  ++F +ILR+ A S  A +LG  FHCQI+K
Sbjct: 1   MIRVSLES-GVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEA-QLGEAFHCQIMK 58

Query: 300 LGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPKRDA 413
           +GFE+++ LQTGLL+F+AK G ++ A+ +FD M +R++
Sbjct: 59  MGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNS 96


>ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325308|gb|EFH55728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 583

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 45/123 (36%), Positives = 76/123 (61%)
 Frame = +3

Query: 51  RNLDYALLFLQNLPNPDTSLWNSLIQASTETIGKNQDFLGFYNSMLSENVAPDNSTFRMI 230
           R + Y  L   ++P PD  L+NS+I+ ST  +      + +Y  MLS NV+P N TF  +
Sbjct: 55  RAIAYTHLLFLSVPLPDDFLFNSVIK-STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSV 113

Query: 231 LRASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPKRD 410
           +++ AD LSA K+G   HC  +  GF  + ++Q  L+ F++K G++++A+++FD MP++ 
Sbjct: 114 IKSCAD-LSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKS 172

Query: 411 AVA 419
            VA
Sbjct: 173 VVA 175



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/122 (27%), Positives = 62/122 (50%)
 Frame = +3

Query: 54  NLDYALLFLQNLPNPDTSLWNSLIQASTETIGKNQDFLGFYNSMLSENVAPDNSTFRMIL 233
           +++ A      +P      WNSL+ +  E  G  +D +  +  M      PD++TF  +L
Sbjct: 157 DMEAARQVFDRMPEKSVVAWNSLV-SGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLL 215

Query: 234 RASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPKRDA 413
            A A +  A  LG+  H  I+  G + N+ L T L+N +++ G++  A+ +FD+M + + 
Sbjct: 216 SACAQT-GAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274

Query: 414 VA 419
            A
Sbjct: 275 AA 276


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 44/123 (35%), Positives = 75/123 (60%)
 Frame = +3

Query: 51  RNLDYALLFLQNLPNPDTSLWNSLIQASTETIGKNQDFLGFYNSMLSENVAPDNSTFRMI 230
           R + Y  L   ++P PD  L+NS+I+ ST  +      + +Y  MLS NV+P N TF  +
Sbjct: 55  RAIAYTHLLFLSVPLPDDFLFNSVIK-STSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSV 113

Query: 231 LRASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPKRD 410
           +++ AD LSA ++G   HC  +  GF  + ++Q  L+ F++K G+++ A+++FD MP++ 
Sbjct: 114 IKSCAD-LSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKS 172

Query: 411 AVA 419
            VA
Sbjct: 173 IVA 175



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 34/122 (27%), Positives = 61/122 (50%)
 Frame = +3

Query: 54  NLDYALLFLQNLPNPDTSLWNSLIQASTETIGKNQDFLGFYNSMLSENVAPDNSTFRMIL 233
           +++ A      +P      WNSL+ +  E  G   + +  +  M      PD++TF  +L
Sbjct: 157 DMEGARQVFDRMPEKSIVAWNSLV-SGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLL 215

Query: 234 RASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPKRDA 413
            A A +  A  LG+  H  II  G + N+ L T L+N +++ G++  A+ +FD+M + + 
Sbjct: 216 SACAQT-GAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNV 274

Query: 414 VA 419
            A
Sbjct: 275 AA 276


>ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata] gi|297332507|gb|EFH62925.1| hypothetical protein
           ARALYDRAFT_475343 [Arabidopsis lyrata subsp. lyrata]
          Length = 608

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/125 (33%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
 Frame = +3

Query: 48  FRNLDYALLFLQNLPNPDTSLWNSLIQASTETIGKNQDFLGFYNSMLSENV-APDNSTFR 224
           F +++YA     ++ N  + +WN+LI+A    + + ++    Y  ML     APD  TF 
Sbjct: 77  FSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFP 136

Query: 225 MILRASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAGNLDSAKRMFDEMPK 404
            +L+A A     ++ G   HCQI+K GF  ++++  GL++F+   G LD A+++FDEMP+
Sbjct: 137 FVLKACAYIFGLSE-GKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPE 195

Query: 405 RDAVA 419
           R  V+
Sbjct: 196 RSLVS 200


>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 43/79 (54%), Positives = 59/79 (74%)
 Frame = +3

Query: 183 MLSENVAPDNSTFRMILRASADSLSANKLGNTFHCQIIKLGFEFNLFLQTGLLNFHAKAG 362
           ML  +V P  ++F +ILR+ A S  A +LG  FHCQI+K+GFE+++ LQTGLL+F+AK G
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEA-QLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 363 NLDSAKRMFDEMPKRDAVA 419
           +L  AKR+F  MP+RD VA
Sbjct: 60  DLKCAKRVFMGMPRRDVVA 78