BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028132
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi...   110   9e-23
ref|NP_188784.3| pentatricopeptide repeat-containing protein [Ar...    91   8e-17
ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arab...    88   6e-16
ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containi...    83   3e-14

>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/98 (56%), Positives = 73/98 (74%)
 Frame = -3

Query: 296 SMQSLSSLIRHHLSKGSPGEAFNIYNQIRGKGTTQHAVIPVLLKACASLSLLNHGKTLHA 117
           S+ +   LIR +LS+G+P EA  +Y  +R KG     V P++LKACASLS++ HGK LHA
Sbjct: 59  SLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHA 118

Query: 116 ETIKCGVVSNVMIGTSLISMYSKCRNLVDSQKLFDEMP 3
           E+IK GV  +VMIGTSL+ MY+KC N+VDS+K+FD MP
Sbjct: 119 ESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMP 156


>ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g21470 gi|11994382|dbj|BAB02341.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332642992|gb|AEE76513.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 46/95 (48%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
 Frame = -3

Query: 284 LSSLIRHHLSKGSPGEAFNIYNQIRGKGTTQHAVIPVLLKACASL-SLLNHGKTLHAETI 108
           +S+LI++H+S+GSP +A  +Y  IR +G      +P++L+ACA +   +  GK LH+E+I
Sbjct: 14  VSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWVPLILRACACVVPRVVLGKLLHSESI 73

Query: 107 KCGVVSNVMIGTSLISMYSKCRNLVDSQKLFDEMP 3
           K GV S+VM+G+SLISMY KC  +V ++K+FDEMP
Sbjct: 74  KFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMP 108


>ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata] gi|297329147|gb|EFH59566.1| hypothetical protein
           ARALYDRAFT_318888 [Arabidopsis lyrata subsp. lyrata]
          Length = 523

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/95 (48%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
 Frame = -3

Query: 284 LSSLIRHHLSKGSPGEAFNIYNQIRGKGTTQHAVIPVLLKACASL-SLLNHGKTLHAETI 108
           +S+LI++H+S+GSP +A  +Y  IR +G      +P++LKACA +   +  GK LH+E+I
Sbjct: 14  VSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWVPLILKACACVVPRVVLGKLLHSESI 73

Query: 107 KCGVVSNVMIGTSLISMYSKCRNLVDSQKLFDEMP 3
           K GV S+VM+G+SLISMY K   +V ++K+FDEMP
Sbjct: 74  KFGVCSDVMVGSSLISMYGKWGCVVSARKVFDEMP 108


>ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/90 (48%), Positives = 61/90 (67%)
 Frame = -3

Query: 272 IRHHLSKGSPGEAFNIYNQIRGKGTTQHAVIPVLLKACASLSLLNHGKTLHAETIKCGVV 93
           IR+H+ +GS   A   Y Q R +G    +V P+L KACASL  L++ K LHAE+IK G  
Sbjct: 19  IRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSE 78

Query: 92  SNVMIGTSLISMYSKCRNLVDSQKLFDEMP 3
           S+V+IGT+L++ YSKC  + D++ LFD MP
Sbjct: 79  SDVIIGTALLTTYSKCGVVRDARNLFDTMP 108


>ref|XP_003551734.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g36730-like [Glycine max]
          Length = 505

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = -3

Query: 311 HLHEQSMQSLSSLIRHHLSKGSPGEAFNIYNQIRGKGTTQHAV-IPVLLKACASLSLLNH 135
           H    S  S + LIR + +  SP EAF ++ ++R +G   + +  P LLK+CA  S L  
Sbjct: 75  HAATPSPISWNILIRGYAASDSPLEAFWVFRKMRERGAMPNKLTFPFLLKSCAVASALFE 134

Query: 134 GKTLHAETIKCGVVSNVMIGTSLISMYSKCRNLVDSQKLFDEMP 3
           GK +HA+ +KCG+ S+V +G +LI+ Y  C+ +VD++K+F EMP
Sbjct: 135 GKQVHADAVKCGLDSDVYVGNNLINFYGCCKKIVDARKVFGEMP 178