BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028088
         (544 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532248.1| pentatricopeptide repeat-containing protein,...   182   4e-44
ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi...   178   5e-43
emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]   177   9e-43
ref|XP_003602939.1| Pentatricopeptide repeat-containing protein ...   155   3e-36
ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36

>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 521

 Score =  182 bits (461), Expect = 4e-44
 Identities = 88/134 (65%), Positives = 102/134 (76%)
 Frame = -3

Query: 404 LQYRKPTTPQPDPPMEXXXXXXXXXXXSKFISHDSAITMIKREKDPQIAIEIFNMASDQR 225
           LQ+ K     PD P E            KFISH+SAI +IKREKDPQ A+EIFNM  +Q+
Sbjct: 27  LQFSKAAPLVPDSPTETSSTLVETGRKCKFISHESAINLIKREKDPQHALEIFNMVGEQK 86

Query: 224 GFNHNHSTYSIILHKLAQSKKFKAVDAILRQMTFETCKFQEGLFLNLMTHFSKSSLHERT 45
           GFNHNH+TYS ++HKLAQ+KKF AVDA+L QMT+ETCKF E +FLNLM HF KSSLHER 
Sbjct: 87  GFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFYKSSLHERV 146

Query: 44  LEMFFAIQPIVREK 3
           LEMF+AIQPIVREK
Sbjct: 147 LEMFYAIQPIVREK 160


>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  178 bits (451), Expect = 5e-43
 Identities = 93/161 (57%), Positives = 113/161 (70%), Gaps = 5/161 (3%)
 Frame = -3

Query: 470 LNP---YRCFXXXXXXXXXXXXXXP-LQYRKPTTPQPDPPM-EXXXXXXXXXXXSKFISH 306
           +NP   YRCF                LQY   T+P+PDPP  E            KFISH
Sbjct: 1   MNPFHEYRCFSCSPSAPSSSLPWISPLQYLNATSPKPDPPATEATTTMVEPRKKPKFISH 60

Query: 305 DSAITMIKREKDPQIAIEIFNMASDQRGFNHNHSTYSIILHKLAQSKKFKAVDAILRQMT 126
           +SAI +IKRE DPQ A+EIFN  ++QRGF+HN++TY+ ILHKLA+SKKF+A+DA+L QMT
Sbjct: 61  ESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMT 120

Query: 125 FETCKFQEGLFLNLMTHFSKSSLHERTLEMFFAIQPIVREK 3
           +ETCKF EG+FLNLM HFSK SLHER +EMF AI+PIVREK
Sbjct: 121 YETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREK 161


>emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
          Length = 714

 Score =  177 bits (449), Expect = 9e-43
 Identities = 93/161 (57%), Positives = 112/161 (69%), Gaps = 5/161 (3%)
 Frame = -3

Query: 470 LNP---YRCFXXXXXXXXXXXXXXP-LQYRKPTTPQPDPPM-EXXXXXXXXXXXSKFISH 306
           +NP   YRCF                LQY   T+P+PDPP  E            KFISH
Sbjct: 71  MNPFXEYRCFSCSPSAPSSSLPWISPLQYLNATSPKPDPPATEATTTMVEPRKKPKFISH 130

Query: 305 DSAITMIKREKDPQIAIEIFNMASDQRGFNHNHSTYSIILHKLAQSKKFKAVDAILRQMT 126
           +SAI +IKRE DPQ A+EIFN  ++QRGF+HN++TY+ ILHKLA+SKKF+A+DA+L QMT
Sbjct: 131 ESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMT 190

Query: 125 FETCKFQEGLFLNLMTHFSKSSLHERTLEMFFAIQPIVREK 3
           +ETCKF EG+FLNLM HFSK SLHER +EMF AI PIVREK
Sbjct: 191 YETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIXPIVREK 231


>ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491987|gb|AES73190.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  155 bits (393), Expect = 3e-36
 Identities = 75/134 (55%), Positives = 96/134 (71%)
 Frame = -3

Query: 404 LQYRKPTTPQPDPPMEXXXXXXXXXXXSKFISHDSAITMIKREKDPQIAIEIFNMASDQR 225
           L + KP  P+ DPP E            K+I+HD AI +IKREKDPQ A++IFNM S+Q+
Sbjct: 103 LNFTKPLEPKLDPPPEIVVAETRKKS--KYITHDVAINLIKREKDPQHALKIFNMVSEQK 160

Query: 224 GFNHNHSTYSIILHKLAQSKKFKAVDAILRQMTFETCKFQEGLFLNLMTHFSKSSLHERT 45
           GFNHN++TY+ IL KLAQ KKF+AVD +L QMT+E CKF EG+F+NLM H+SK   HE+ 
Sbjct: 161 GFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACKFHEGVFINLMKHYSKCGFHEKV 220

Query: 44  LEMFFAIQPIVREK 3
            + F +IQ IVREK
Sbjct: 221 FDAFLSIQTIVREK 234


>ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  155 bits (392), Expect = 4e-36
 Identities = 77/129 (59%), Positives = 92/129 (71%)
 Frame = -3

Query: 389 PTTPQPDPPMEXXXXXXXXXXXSKFISHDSAITMIKREKDPQIAIEIFNMASDQRGFNHN 210
           P  P P PP +            K ISHDSAI +IKREKDPQ A+ IFNM S+Q GF HN
Sbjct: 77  PPEPLPSPPRKR-----------KHISHDSAIDLIKREKDPQHALNIFNMVSEQNGFQHN 125

Query: 209 HSTYSIILHKLAQSKKFKAVDAILRQMTFETCKFQEGLFLNLMTHFSKSSLHERTLEMFF 30
           ++TY+ IL KLA+   F AVD +L QMT+ETCKF EG+F+NLM HFSKSSLHE+ L  +F
Sbjct: 126 NATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFVNLMKHFSKSSLHEKLLHAYF 185

Query: 29  AIQPIVREK 3
           +IQPIVREK
Sbjct: 186 SIQPIVREK 194