BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028048
         (816 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   446   e-123
ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|2...   442   e-122
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   437   e-120
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...   431   e-118
ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III s...   412   e-113

>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  446 bits (1148), Expect = e-123
 Identities = 221/274 (80%), Positives = 246/274 (89%), Gaps = 3/274 (1%)
 Frame = -2

Query: 815  NVPVDQLNFRKKCIYVAVMLRRMMDAILNKNAMDDKDYVGNKRLELSGQLISLLFEDLFK 636
            NVPV Q NFR KC+YVAVMLRRMMDAILNK+AMDDKDYVGNKRLELSGQLISLLFEDLFK
Sbjct: 316  NVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 375

Query: 635  TMNSEVKKWADMALTKSSRTVIFDMAKHIR---QDIITNGLEKSMATGNWDLKRFKMHRK 465
            TM SEVKK  D  L K SR+  FD ++ +R   +D IT GLE++++TGNWD+KRF+MHRK
Sbjct: 376  TMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTGNWDVKRFRMHRK 435

Query: 464  GMTQVLARLSFIASVGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVK 285
            GM+QV+ARLS+I S+GHMTKI PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVK
Sbjct: 436  GMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 495

Query: 284  NLALMTHVTTDEEEGPLVSLCRSLGVEDLELMSGEELHSPNSFLVVCNGLILGKHRKPQR 105
            NLALMTHVTTDEEE PL+SLC SLGVEDLEL+SGEELH+PNSFL++ NGLILGKHR+PQR
Sbjct: 496  NLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQR 555

Query: 104  FANTLKKLRRAAMIGEFVSVFVNEKQRCVYIASD 3
            FAN L+KLRRA  IGEFVSVFVNEKQ CVYIASD
Sbjct: 556  FANALRKLRRAGKIGEFVSVFVNEKQHCVYIASD 589


>ref|XP_002321356.1| predicted protein [Populus trichocarpa] gi|222868352|gb|EEF05483.1|
            predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  442 bits (1138), Expect = e-122
 Identities = 214/271 (78%), Positives = 248/271 (91%)
 Frame = -2

Query: 815  NVPVDQLNFRKKCIYVAVMLRRMMDAILNKNAMDDKDYVGNKRLELSGQLISLLFEDLFK 636
            NVPV + NFR KCIYVAVMLRRMM+A+LNK+AMDDKDYVGNKRLELSGQLISLLFEDLFK
Sbjct: 315  NVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 374

Query: 635  TMNSEVKKWADMALTKSSRTVIFDMAKHIRQDIITNGLEKSMATGNWDLKRFKMHRKGMT 456
            TM +EV+K AD  L K +R+  FD +++I +D ITNGLE++++TGNWD+KRF+M+RKG+T
Sbjct: 375  TMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDVKRFRMNRKGVT 434

Query: 455  QVLARLSFIASVGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLA 276
            QVL RLS++AS+GHMT+I PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 435  QVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 494

Query: 275  LMTHVTTDEEEGPLVSLCRSLGVEDLELMSGEELHSPNSFLVVCNGLILGKHRKPQRFAN 96
            LMTHVTTDEEE PL+SLC+ LGVEDLEL+SGEELH+PNSFLV+ NGLILGKHR+PQ+FAN
Sbjct: 495  LMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQQFAN 554

Query: 95   TLKKLRRAAMIGEFVSVFVNEKQRCVYIASD 3
             ++KLRRA  IGEFVSVFVNEKQR VYIASD
Sbjct: 555  AMRKLRRAGKIGEFVSVFVNEKQRAVYIASD 585


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  437 bits (1125), Expect = e-120
 Identities = 212/271 (78%), Positives = 247/271 (91%)
 Frame = -2

Query: 815  NVPVDQLNFRKKCIYVAVMLRRMMDAILNKNAMDDKDYVGNKRLELSGQLISLLFEDLFK 636
            NVPV + NFR KC+YVAVMLRRMM+A+LNK+AMDDKDYVGNKRLELSGQLISLLFEDLFK
Sbjct: 319  NVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 378

Query: 635  TMNSEVKKWADMALTKSSRTVIFDMAKHIRQDIITNGLEKSMATGNWDLKRFKMHRKGMT 456
            TM +EV++  D  LTK +R+  FD+A++I +D ITNGLE++++TGN+D+KRFKMHRKGMT
Sbjct: 379  TMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMT 438

Query: 455  QVLARLSFIASVGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLA 276
            QVL RLS+IAS+G MT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 439  QVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 498

Query: 275  LMTHVTTDEEEGPLVSLCRSLGVEDLELMSGEELHSPNSFLVVCNGLILGKHRKPQRFAN 96
            LMTHVTTD+EEGPL+SLC  LGVEDLEL+SGEELH+PNSFLV+ NGLILGKHR+PQ F N
Sbjct: 499  LMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVN 558

Query: 95   TLKKLRRAAMIGEFVSVFVNEKQRCVYIASD 3
            +++KLRRA  IGEFVSVFVNEKQR VY+ASD
Sbjct: 559  SMRKLRRAGKIGEFVSVFVNEKQRAVYLASD 589


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score =  431 bits (1107), Expect = e-118
 Identities = 209/271 (77%), Positives = 241/271 (88%)
 Frame = -2

Query: 815  NVPVDQLNFRKKCIYVAVMLRRMMDAILNKNAMDDKDYVGNKRLELSGQLISLLFEDLFK 636
            NVPV + NF  KCIYVAVM+RRMMDAIL+K+AMDDKDYVGNKRLELSGQLISLLFEDLFK
Sbjct: 337  NVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 396

Query: 635  TMNSEVKKWADMALTKSSRTVIFDMAKHIRQDIITNGLEKSMATGNWDLKRFKMHRKGMT 456
            TM SEVKK  D  L K SR+  FD ++H+  +II+ GLE++++TGNWD+KRF+MHRKGM+
Sbjct: 397  TMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERTLSTGNWDVKRFRMHRKGMS 456

Query: 455  QVLARLSFIASVGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLA 276
            QVLARLSFI+++GH+T++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE+CGLVKNLA
Sbjct: 457  QVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLA 516

Query: 275  LMTHVTTDEEEGPLVSLCRSLGVEDLELMSGEELHSPNSFLVVCNGLILGKHRKPQRFAN 96
            LMTHVTTD+EEGPL+SLC  LGVEDLEL+S EELH+PNSFLV+ NG ILGKHR+PQ FA 
Sbjct: 517  LMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFLVIFNGRILGKHRRPQYFAT 576

Query: 95   TLKKLRRAAMIGEFVSVFVNEKQRCVYIASD 3
             ++ LRRA  IGEFVSVFVNEKQ CVYIASD
Sbjct: 577  GMRMLRRAGKIGEFVSVFVNEKQHCVYIASD 607


>ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score =  412 bits (1058), Expect = e-113
 Identities = 202/273 (73%), Positives = 235/273 (86%), Gaps = 2/273 (0%)
 Frame = -2

Query: 815  NVPVDQLNFRKKCIYVAVMLRRMMDAILNKNAMDDKDYVGNKRLELSGQLISLLFEDLFK 636
            NVPVDQ NFR KCIYVAVM+RR+MDAILNK+AMDDKDYVGNKRLELSGQLISLLFEDLFK
Sbjct: 328  NVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 387

Query: 635  TMNSEVKKWADMALTKSSRTVIFDMAKHIRQ--DIITNGLEKSMATGNWDLKRFKMHRKG 462
            +M +EVK   D  L K  +   FD+   + +   IIT GLE++++TGN+++KRF+M RKG
Sbjct: 388  SMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLGLERTLSTGNFEIKRFRMERKG 447

Query: 461  MTQVLARLSFIASVGHMTKIQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKN 282
            MTQVL RLSFI ++GHMT++ PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKN
Sbjct: 448  MTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKN 507

Query: 281  LALMTHVTTDEEEGPLVSLCRSLGVEDLELMSGEELHSPNSFLVVCNGLILGKHRKPQRF 102
            LALMTHVTTDEEE PL+SLC SLGVED++ +S EELH+P+SFLV+ NGLILGKHR+P  F
Sbjct: 508  LALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHTPDSFLVIFNGLILGKHRRPLHF 567

Query: 101  ANTLKKLRRAAMIGEFVSVFVNEKQRCVYIASD 3
            A  ++KLRRA  IGEFVSV+VNEKQ CVY+ASD
Sbjct: 568  ATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASD 600