BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00028033
         (253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containi...    64   8e-12
ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containi...    66   2e-11
ref|XP_003610927.1| Pentatricopeptide repeat-containing protein ...    64   4e-11
ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containi...    64   3e-10
ref|XP_002522334.1| pentatricopeptide repeat-containing protein,...    58   6e-10

>ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
           gi|449484855|ref|XP_004156999.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score = 63.9 bits (154), Expect(2) = 8e-12
 Identities = 30/47 (63%), Positives = 32/47 (68%)
 Frame = -1

Query: 211 YAKCGCLVSARKVFDEMRERDMCSWNTMISGYAKAWKIEEAYELL*K 71
           YAKCG LV A KVFDEM  RD+CSWN MISGY K    E+A  L  K
Sbjct: 163 YAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDK 209



 Score = 30.8 bits (68), Expect(2) = 8e-12
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 80  FVKMPGRDNFLWSTMISG 27
           F KMP RDNF W+ +ISG
Sbjct: 207 FDKMPNRDNFSWTAIISG 224


>ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score = 66.2 bits (160), Expect(3) = 2e-11
 Identities = 28/44 (63%), Positives = 37/44 (84%)
 Frame = -1

Query: 211 YAKCGCLVSARKVFDEMRERDMCSWNTMISGYAKAWKIEEAYEL 80
           Y KC  LV+A+++FDEM ERD+CSWN MISGYAKA +++EA +L
Sbjct: 134 YIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKL 177



 Score = 25.0 bits (53), Expect(3) = 2e-11
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 80  FVKMPGRDNFLWSTMISG 27
           F +M  RDNF W+ M SG
Sbjct: 178 FDQMTERDNFSWTAMTSG 195



 Score = 21.6 bits (44), Expect(3) = 2e-11
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 249 VPVVFISNRLLDL 211
           VP V ISNR+LD+
Sbjct: 121 VPGVVISNRILDM 133


>ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512262|gb|AES93885.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 802

 Score = 63.9 bits (154), Expect(2) = 4e-11
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = -1

Query: 211 YAKCGCLVSARKVFDEMRERDMCSWNTMISGYAKAWKIEEAYEL 80
           YAKCG LV A+ +FDE+ ++D+CSWNTMISGYA   +IE+A +L
Sbjct: 108 YAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKL 151



 Score = 28.5 bits (62), Expect(2) = 4e-11
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 80  FVKMPGRDNFLWSTMISG 27
           F +MP RDNF W+ +ISG
Sbjct: 152 FDEMPHRDNFSWNAVISG 169


>ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score = 64.3 bits (155), Expect(2) = 3e-10
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = -1

Query: 211 YAKCGCLVSARKVFDEMRERDMCSWNTMISGYAKAWKIEEAYEL 80
           YAKCG LV A+ +FDEM  RD+CSWNTMI GYAK  ++E+A +L
Sbjct: 132 YAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKL 175



 Score = 25.0 bits (53), Expect(2) = 3e-10
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 249 VPVVFISNRLLDL 211
           VP VFISNRLLD+
Sbjct: 119 VPGVFISNRLLDM 131


>ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538412|gb|EEF40018.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 57.8 bits (138), Expect(3) = 6e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = -1

Query: 211 YAKCGCLVSARKVFDEMRERDMCSWNTMISGYAKAWKIEEAYEL 80
           YAKC  LV A+K+F+EM ERD+CSWN +ISG AK   ++EA +L
Sbjct: 125 YAKCNDLVDAQKLFEEMGERDLCSWNVLISGCAKMGLLKEARKL 168



 Score = 29.3 bits (64), Expect(3) = 6e-10
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 80  FVKMPGRDNFLWSTMISG 27
           F  MP RDNF W+ MISG
Sbjct: 169 FDTMPERDNFSWTAMISG 186



 Score = 20.8 bits (42), Expect(3) = 6e-10
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 249 VPVVFISNRLLDL 211
           +P + ISNRLLD+
Sbjct: 112 IPGLVISNRLLDM 124