BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027453
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   119   2e-25
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   119   2e-25
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s...   116   2e-24
gb|ADW19652.1| RNA polymerase III large subunit [Rhododendron ca...   116   2e-24
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              115   4e-24

>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/76 (76%), Positives = 65/76 (85%)
 Frame = +3

Query: 3   LTLPEKNYTTKDKSGDPICPEAMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSVLL 182
           LT+ EK Y T    G  + PEAMCPNDGFVYFRNSELLSGQ+GKATLGNGNKDG+FS L+
Sbjct: 540 LTVKEKIYKTP--KGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLV 597

Query: 183 RDYNAHAAAACMNRLA 230
           RDYN+HAAA+CMNRLA
Sbjct: 598 RDYNSHAAASCMNRLA 613


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
           gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
           Japonica Group] gi|38347455|emb|CAD41360.2|
           OSJNBa0076N16.24 [Oryza sativa Japonica Group]
           gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
           Japonica Group] gi|116310339|emb|CAH67354.1|
           OSIGBa0130B08.14 [Oryza sativa Indica Group]
           gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
           Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195112|gb|EEC77539.1| hypothetical protein
           OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/76 (76%), Positives = 65/76 (85%)
 Frame = +3

Query: 3   LTLPEKNYTTKDKSGDPICPEAMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSVLL 182
           LT+ EK Y T    G  + PEAMCPNDGFVYFRNSELLSGQ+GKATLGNGNKDG+FS L+
Sbjct: 602 LTVKEKIYKTP--KGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLV 659

Query: 183 RDYNAHAAAACMNRLA 230
           RDYN+HAAA+CMNRLA
Sbjct: 660 RDYNSHAAASCMNRLA 675


>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Brachypodium distachyon]
          Length = 1400

 Score =  116 bits (290), Expect = 2e-24
 Identities = 57/79 (72%), Positives = 64/79 (81%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   LTLPEKNYTT---KDKSGDPICPEAMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFS 173
           LT+ EK Y     +DK    +  E MCPNDGFVYFRNSELLSGQLGK TLGNGNK+G+FS
Sbjct: 607 LTVEEKVYIKHKERDKKAITVLEETMCPNDGFVYFRNSELLSGQLGKKTLGNGNKEGMFS 666

Query: 174 VLLRDYNAHAAAACMNRLA 230
           VLLRDYN+HAAA+CMNRLA
Sbjct: 667 VLLRDYNSHAAASCMNRLA 685


>gb|ADW19652.1| RNA polymerase III large subunit [Rhododendron camtschaticum]
          Length = 207

 Score =  116 bits (290), Expect = 2e-24
 Identities = 59/76 (77%), Positives = 65/76 (85%)
 Frame = +3

Query: 3   LTLPEKNYTTKDKSGDPICPEAMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSVLL 182
           LT+ EKNY+   KSG     E MCPNDGFVYFRNSEL+ GQLGKATLGNGNKDGL+S+LL
Sbjct: 30  LTVREKNYS---KSG-----ETMCPNDGFVYFRNSELICGQLGKATLGNGNKDGLYSILL 81

Query: 183 RDYNAHAAAACMNRLA 230
           RDYNA+AAAACMNRLA
Sbjct: 82  RDYNAYAAAACMNRLA 97


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  115 bits (288), Expect = 4e-24
 Identities = 58/76 (76%), Positives = 62/76 (81%)
 Frame = +3

Query: 3   LTLPEKNYTTKDKSGDPICPEAMCPNDGFVYFRNSELLSGQLGKATLGNGNKDGLFSVLL 182
           LT+ EK Y  +         E MCP+DGFVYFRNSEL+SGQLGKATLGNGNKDGLFSVLL
Sbjct: 612 LTVMEKTYNKRRGK------ETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVLL 665

Query: 183 RDYNAHAAAACMNRLA 230
           RDYNAHAAAACMNRLA
Sbjct: 666 RDYNAHAAAACMNRLA 681